Hb_000429_160

Information

Type -
Description -
Location Contig429: 226931-246280
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05360g
description POPTRDRAFT_762147; exostosin family protein
nr
ID XP_012086094.1
description PREDICTED: uncharacterized protein LOC105645177 [Jatropha curcas]
swissprot
ID Q6NMM8
description Probable glucuronoxylan glucuronosyltransferase F8H OS=Arabidopsis thaliana GN=F8H PE=2 SV=1
trembl
ID A0A067JQ43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42111: 228352-237387 , PASA_asmbl_42112: 237521-244235 , PASA_asmbl_42113: 244246-245596 , PASA_asmbl_42114: 245625-246342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000429_160 0.0 - - PREDICTED: uncharacterized protein LOC105645177 [Jatropha curcas]
2 Hb_001318_100 0.1214842761 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
3 Hb_003125_210 0.1259373068 - - Phospholipase C 4 precursor, putative [Ricinus communis]
4 Hb_031862_120 0.1259874545 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
5 Hb_028227_040 0.1295971577 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
6 Hb_003147_040 0.130244453 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
7 Hb_000659_040 0.1307922245 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
8 Hb_000692_100 0.1358263812 - - calcium-dependent protein kinase, putative [Ricinus communis]
9 Hb_000272_030 0.1364857791 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
10 Hb_002838_010 0.1384693622 - - AGPase large subunit protein [Hevea brasiliensis]
11 Hb_001339_030 0.1385211043 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
12 Hb_001289_010 0.1390160385 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
13 Hb_006355_060 0.1391300432 - - PREDICTED: transcription factor PIF1-like isoform X2 [Jatropha curcas]
14 Hb_003086_030 0.140297783 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
15 Hb_000434_060 0.1423092757 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
16 Hb_000856_200 0.1438018209 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
17 Hb_000941_090 0.1448742796 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
18 Hb_001242_040 0.145202766 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
19 Hb_000230_450 0.1456206058 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010222_040 0.1466646336 - - PREDICTED: kinesin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000429_160 Hb_000429_160 Hb_001318_100 Hb_001318_100 Hb_000429_160--Hb_001318_100 Hb_003125_210 Hb_003125_210 Hb_000429_160--Hb_003125_210 Hb_031862_120 Hb_031862_120 Hb_000429_160--Hb_031862_120 Hb_028227_040 Hb_028227_040 Hb_000429_160--Hb_028227_040 Hb_003147_040 Hb_003147_040 Hb_000429_160--Hb_003147_040 Hb_000659_040 Hb_000659_040 Hb_000429_160--Hb_000659_040 Hb_003266_090 Hb_003266_090 Hb_001318_100--Hb_003266_090 Hb_010222_040 Hb_010222_040 Hb_001318_100--Hb_010222_040 Hb_009113_080 Hb_009113_080 Hb_001318_100--Hb_009113_080 Hb_001318_100--Hb_000659_040 Hb_001318_100--Hb_003125_210 Hb_000856_200 Hb_000856_200 Hb_001318_100--Hb_000856_200 Hb_003125_210--Hb_009113_080 Hb_004696_010 Hb_004696_010 Hb_003125_210--Hb_004696_010 Hb_002815_020 Hb_002815_020 Hb_003125_210--Hb_002815_020 Hb_003086_030 Hb_003086_030 Hb_003125_210--Hb_003086_030 Hb_001951_080 Hb_001951_080 Hb_003125_210--Hb_001951_080 Hb_003125_210--Hb_010222_040 Hb_143871_010 Hb_143871_010 Hb_031862_120--Hb_143871_010 Hb_000941_090 Hb_000941_090 Hb_031862_120--Hb_000941_090 Hb_005051_010 Hb_005051_010 Hb_031862_120--Hb_005051_010 Hb_000753_150 Hb_000753_150 Hb_031862_120--Hb_000753_150 Hb_000427_040 Hb_000427_040 Hb_031862_120--Hb_000427_040 Hb_000272_030 Hb_000272_030 Hb_031862_120--Hb_000272_030 Hb_001242_040 Hb_001242_040 Hb_028227_040--Hb_001242_040 Hb_028227_040--Hb_000272_030 Hb_028227_040--Hb_000659_040 Hb_006570_060 Hb_006570_060 Hb_028227_040--Hb_006570_060 Hb_003054_070 Hb_003054_070 Hb_028227_040--Hb_003054_070 Hb_013394_120 Hb_013394_120 Hb_028227_040--Hb_013394_120 Hb_003147_040--Hb_000659_040 Hb_002095_020 Hb_002095_020 Hb_003147_040--Hb_002095_020 Hb_001369_390 Hb_001369_390 Hb_003147_040--Hb_001369_390 Hb_002902_070 Hb_002902_070 Hb_003147_040--Hb_002902_070 Hb_000473_100 Hb_000473_100 Hb_003147_040--Hb_000473_100 Hb_000868_130 Hb_000868_130 Hb_003147_040--Hb_000868_130 Hb_000363_250 Hb_000363_250 Hb_000659_040--Hb_000363_250 Hb_000659_040--Hb_000272_030 Hb_000659_040--Hb_000856_200 Hb_007894_070 Hb_007894_070 Hb_000659_040--Hb_007894_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.097266 1.63839 1.74374 3.57128 0.108208 0.113491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.014534 0.166099 0.490727 2.90125

CAGE analysis