Hb_002078_070

Information

Type -
Description -
Location Contig2078: 41414-43265
Sequence    

Annotation

kegg
ID rcu:RCOM_1080830
description hypothetical protein
nr
ID XP_002514940.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMH1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1080830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_087717_010 0.0797276422 - - hypothetical protein JCGZ_01246 [Jatropha curcas]
3 Hb_004724_280 0.0888695299 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000336_010 0.0925626838 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
5 Hb_105377_010 0.1020540438 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
6 Hb_003420_010 0.10332649 - - zinc finger protein, putative [Ricinus communis]
7 Hb_001123_330 0.1042930215 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
8 Hb_000175_080 0.1093822294 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
9 Hb_000679_290 0.1116846736 transcription factor TF Family: AUX/IAA ATP binding protein, putative [Ricinus communis]
10 Hb_164853_010 0.1121944144 - - Patatin precursor, putative [Ricinus communis]
11 Hb_013394_110 0.1194431307 - - zinc finger protein, putative [Ricinus communis]
12 Hb_000445_260 0.1203906473 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
13 Hb_003598_020 0.1267816845 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
14 Hb_123713_010 0.1268732892 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_007474_010 0.1275196096 - - vacuolar invertase [Manihot esculenta]
16 Hb_003185_040 0.1277343319 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
17 Hb_000792_100 0.1281768565 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
18 Hb_012675_010 0.1312857277 - - zinc finger protein, putative [Ricinus communis]
19 Hb_003055_160 0.1367244835 - - PREDICTED: S-linalool synthase isoform X1 [Jatropha curcas]
20 Hb_004880_040 0.1375721354 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002078_070 Hb_002078_070 Hb_087717_010 Hb_087717_010 Hb_002078_070--Hb_087717_010 Hb_004724_280 Hb_004724_280 Hb_002078_070--Hb_004724_280 Hb_000336_010 Hb_000336_010 Hb_002078_070--Hb_000336_010 Hb_105377_010 Hb_105377_010 Hb_002078_070--Hb_105377_010 Hb_003420_010 Hb_003420_010 Hb_002078_070--Hb_003420_010 Hb_001123_330 Hb_001123_330 Hb_002078_070--Hb_001123_330 Hb_013394_110 Hb_013394_110 Hb_087717_010--Hb_013394_110 Hb_087717_010--Hb_004724_280 Hb_164853_010 Hb_164853_010 Hb_087717_010--Hb_164853_010 Hb_087717_010--Hb_003420_010 Hb_012675_010 Hb_012675_010 Hb_087717_010--Hb_012675_010 Hb_004724_280--Hb_000336_010 Hb_004724_280--Hb_001123_330 Hb_000175_080 Hb_000175_080 Hb_004724_280--Hb_000175_080 Hb_004724_280--Hb_003420_010 Hb_007474_010 Hb_007474_010 Hb_004724_280--Hb_007474_010 Hb_000336_010--Hb_000175_080 Hb_000336_010--Hb_001123_330 Hb_000336_010--Hb_003420_010 Hb_003185_040 Hb_003185_040 Hb_000336_010--Hb_003185_040 Hb_000336_010--Hb_105377_010 Hb_003598_020 Hb_003598_020 Hb_105377_010--Hb_003598_020 Hb_004880_040 Hb_004880_040 Hb_105377_010--Hb_004880_040 Hb_105377_010--Hb_003185_040 Hb_105377_010--Hb_004724_280 Hb_005731_040 Hb_005731_040 Hb_105377_010--Hb_005731_040 Hb_003420_010--Hb_164853_010 Hb_003420_010--Hb_000175_080 Hb_086720_010 Hb_086720_010 Hb_003420_010--Hb_086720_010 Hb_007407_020 Hb_007407_020 Hb_003420_010--Hb_007407_020 Hb_000295_140 Hb_000295_140 Hb_003420_010--Hb_000295_140 Hb_001123_330--Hb_000175_080 Hb_003680_180 Hb_003680_180 Hb_001123_330--Hb_003680_180 Hb_001123_330--Hb_003185_040 Hb_001123_330--Hb_007474_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0359011 0.0288466 2.05952 2.88843 0.0287047 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.103972

CAGE analysis