Hb_011161_090

Information

Type -
Description -
Location Contig11161: 79590-80109
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011161_090 0.0 - - -
2 Hb_004204_220 0.0922300051 - - -
3 Hb_003266_010 0.1016505968 - - hypothetical protein JCGZ_21945 [Jatropha curcas]
4 Hb_002095_020 0.1046208645 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
5 Hb_001629_050 0.1154352732 - - structural constituent of cell wall, putative [Ricinus communis]
6 Hb_003858_060 0.1175858027 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
7 Hb_005723_090 0.1239128377 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002902_070 0.1244223292 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
9 Hb_005329_030 0.1272628723 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
10 Hb_005057_030 0.1290454172 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
11 Hb_000868_130 0.1320654706 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
12 Hb_000834_100 0.1322992979 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
13 Hb_001305_020 0.1339165038 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
14 Hb_008461_070 0.1352079514 - - PREDICTED: ethylene-overproduction protein 1 isoform X1 [Jatropha curcas]
15 Hb_143629_200 0.1355949479 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
16 Hb_094437_020 0.1384670355 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
17 Hb_000963_120 0.1390971033 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
18 Hb_004374_030 0.1392984973 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
19 Hb_125961_010 0.1413312566 - - ATP binding protein, putative [Ricinus communis]
20 Hb_005183_100 0.142037141 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]

Gene co-expression network

sample Hb_011161_090 Hb_011161_090 Hb_004204_220 Hb_004204_220 Hb_011161_090--Hb_004204_220 Hb_003266_010 Hb_003266_010 Hb_011161_090--Hb_003266_010 Hb_002095_020 Hb_002095_020 Hb_011161_090--Hb_002095_020 Hb_001629_050 Hb_001629_050 Hb_011161_090--Hb_001629_050 Hb_003858_060 Hb_003858_060 Hb_011161_090--Hb_003858_060 Hb_005723_090 Hb_005723_090 Hb_011161_090--Hb_005723_090 Hb_004204_220--Hb_001629_050 Hb_004204_220--Hb_003858_060 Hb_004204_220--Hb_002095_020 Hb_000834_100 Hb_000834_100 Hb_004204_220--Hb_000834_100 Hb_002902_070 Hb_002902_070 Hb_004204_220--Hb_002902_070 Hb_000868_130 Hb_000868_130 Hb_003266_010--Hb_000868_130 Hb_003266_010--Hb_002095_020 Hb_000473_100 Hb_000473_100 Hb_003266_010--Hb_000473_100 Hb_017358_020 Hb_017358_020 Hb_003266_010--Hb_017358_020 Hb_144449_010 Hb_144449_010 Hb_003266_010--Hb_144449_010 Hb_001046_030 Hb_001046_030 Hb_003266_010--Hb_001046_030 Hb_001369_390 Hb_001369_390 Hb_002095_020--Hb_001369_390 Hb_002095_020--Hb_000868_130 Hb_004374_030 Hb_004374_030 Hb_002095_020--Hb_004374_030 Hb_000784_060 Hb_000784_060 Hb_002095_020--Hb_000784_060 Hb_167211_010 Hb_167211_010 Hb_001629_050--Hb_167211_010 Hb_000392_490 Hb_000392_490 Hb_001629_050--Hb_000392_490 Hb_001629_050--Hb_002095_020 Hb_001629_050--Hb_003858_060 Hb_001778_040 Hb_001778_040 Hb_001629_050--Hb_001778_040 Hb_003858_060--Hb_000834_100 Hb_002876_280 Hb_002876_280 Hb_003858_060--Hb_002876_280 Hb_000856_210 Hb_000856_210 Hb_003858_060--Hb_000856_210 Hb_094437_020 Hb_094437_020 Hb_003858_060--Hb_094437_020 Hb_005183_100 Hb_005183_100 Hb_005723_090--Hb_005183_100 Hb_005057_030 Hb_005057_030 Hb_005723_090--Hb_005057_030 Hb_000120_480 Hb_000120_480 Hb_005723_090--Hb_000120_480 Hb_000622_030 Hb_000622_030 Hb_005723_090--Hb_000622_030 Hb_001158_250 Hb_001158_250 Hb_005723_090--Hb_001158_250 Hb_001305_020 Hb_001305_020 Hb_005723_090--Hb_001305_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.34647 0.888853 2.86294 0 0.15708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.00201 3.76512

CAGE analysis