Hb_000749_120

Information

Type -
Description -
Location Contig749: 112561-120026
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41220g
description hypothetical protein
nr
ID XP_012084939.1
description PREDICTED: uncharacterized protein LOC105644255 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K453
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56787: 115693-118728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_120 0.0 - - PREDICTED: uncharacterized protein LOC105644255 isoform X2 [Jatropha curcas]
2 Hb_000011_370 0.1038064296 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
3 Hb_001597_030 0.1145167051 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
4 Hb_027556_060 0.1198850784 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
5 Hb_008143_060 0.1206074802 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
6 Hb_005731_070 0.1295079533 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005144_080 0.1337560812 - - Serine carboxypeptidase, putative [Ricinus communis]
8 Hb_003189_010 0.1359276061 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
9 Hb_001195_740 0.1388550076 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
10 Hb_009767_050 0.1414969469 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
11 Hb_001157_190 0.1445706739 - - PREDICTED: protein YLS3 [Jatropha curcas]
12 Hb_001473_060 0.1446242791 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]
13 Hb_001832_140 0.1447059426 - - endomembrane protein 70 family protein [Medicago truncatula]
14 Hb_004846_080 0.1452714558 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
15 Hb_005357_120 0.1454434019 transcription factor TF Family: MYB-related -
16 Hb_000714_060 0.1479543687 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Populus euphratica]
17 Hb_002276_250 0.1497658235 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
18 Hb_002818_170 0.1503388031 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
19 Hb_005839_030 0.1513739786 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
20 Hb_000956_070 0.152129169 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]

Gene co-expression network

sample Hb_000749_120 Hb_000749_120 Hb_000011_370 Hb_000011_370 Hb_000749_120--Hb_000011_370 Hb_001597_030 Hb_001597_030 Hb_000749_120--Hb_001597_030 Hb_027556_060 Hb_027556_060 Hb_000749_120--Hb_027556_060 Hb_008143_060 Hb_008143_060 Hb_000749_120--Hb_008143_060 Hb_005731_070 Hb_005731_070 Hb_000749_120--Hb_005731_070 Hb_005144_080 Hb_005144_080 Hb_000749_120--Hb_005144_080 Hb_000011_370--Hb_005731_070 Hb_008566_080 Hb_008566_080 Hb_000011_370--Hb_008566_080 Hb_000714_060 Hb_000714_060 Hb_000011_370--Hb_000714_060 Hb_000014_080 Hb_000014_080 Hb_000011_370--Hb_000014_080 Hb_000011_370--Hb_001597_030 Hb_000834_220 Hb_000834_220 Hb_001597_030--Hb_000834_220 Hb_001157_190 Hb_001157_190 Hb_001597_030--Hb_001157_190 Hb_003540_120 Hb_003540_120 Hb_001597_030--Hb_003540_120 Hb_001138_070 Hb_001138_070 Hb_001597_030--Hb_001138_070 Hb_001776_070 Hb_001776_070 Hb_027556_060--Hb_001776_070 Hb_003216_140 Hb_003216_140 Hb_027556_060--Hb_003216_140 Hb_146901_020 Hb_146901_020 Hb_027556_060--Hb_146901_020 Hb_000152_590 Hb_000152_590 Hb_027556_060--Hb_000152_590 Hb_001247_090 Hb_001247_090 Hb_027556_060--Hb_001247_090 Hb_000411_020 Hb_000411_020 Hb_027556_060--Hb_000411_020 Hb_001195_740 Hb_001195_740 Hb_008143_060--Hb_001195_740 Hb_006711_040 Hb_006711_040 Hb_008143_060--Hb_006711_040 Hb_001832_140 Hb_001832_140 Hb_008143_060--Hb_001832_140 Hb_001252_050 Hb_001252_050 Hb_008143_060--Hb_001252_050 Hb_000696_250 Hb_000696_250 Hb_008143_060--Hb_000696_250 Hb_000465_130 Hb_000465_130 Hb_008143_060--Hb_000465_130 Hb_007386_030 Hb_007386_030 Hb_005731_070--Hb_007386_030 Hb_007017_100 Hb_007017_100 Hb_005731_070--Hb_007017_100 Hb_005731_070--Hb_000714_060 Hb_005731_070--Hb_000014_080 Hb_000594_160 Hb_000594_160 Hb_005731_070--Hb_000594_160 Hb_002025_380 Hb_002025_380 Hb_005144_080--Hb_002025_380 Hb_006277_030 Hb_006277_030 Hb_005144_080--Hb_006277_030 Hb_004282_010 Hb_004282_010 Hb_005144_080--Hb_004282_010 Hb_005144_080--Hb_005731_070 Hb_005839_030 Hb_005839_030 Hb_005144_080--Hb_005839_030 Hb_011129_020 Hb_011129_020 Hb_005144_080--Hb_011129_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.189435 1.1481 1.68997 0.0124533 0.0368468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0282971 0.0445261 0 1.1007 0.37388

CAGE analysis