Hb_009615_100

Information

Type -
Description -
Location Contig9615: 77159-79671
Sequence    

Annotation

kegg
ID rcu:RCOM_1454540
description alpha-galactosidase/alpha-n-acetylgalactosaminidase, putative (EC:3.2.1.22)
nr
ID KDP40460.1
description hypothetical protein JCGZ_24459 [Jatropha curcas]
swissprot
ID Q9FT97
description Alpha-galactosidase 1 OS=Arabidopsis thaliana GN=AGAL1 PE=2 SV=1
trembl
ID A0A067L7H7
description Alpha-galactosidase OS=Jatropha curcas GN=JCGZ_24459 PE=3 SV=1
Gene Ontology
ID GO:0052692
description alpha-galactosidase alpha-n-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63732: 77107-77441 , PASA_asmbl_63733: 77766-78763 , PASA_asmbl_63734: 79098-79677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009615_100 0.0 - - hypothetical protein JCGZ_24459 [Jatropha curcas]
2 Hb_006153_130 0.1249799923 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_000411_050 0.1399790157 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
4 Hb_007625_030 0.1455088445 - - unknown [Medicago truncatula]
5 Hb_000210_140 0.1504344048 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
6 Hb_003025_150 0.1508234296 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000847_050 0.1509920771 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
8 Hb_003579_040 0.1514700376 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
9 Hb_000424_100 0.1559941299 desease resistance Gene Name: G-alpha GTP-binding protein (p) alpha subunit, gpa1, putative [Ricinus communis]
10 Hb_003226_030 0.1568620086 - - sucrose synthase 5 [Hevea brasiliensis]
11 Hb_001776_100 0.1570385681 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
12 Hb_000679_260 0.1585789232 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004079_100 0.1588029928 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
14 Hb_000483_130 0.1602893578 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
15 Hb_001008_110 0.161315158 - - -
16 Hb_001898_060 0.1617185473 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000362_050 0.1641157725 transcription factor TF Family: NOZZLE PREDICTED: uncharacterized protein LOC105635737 [Jatropha curcas]
18 Hb_043789_010 0.1643427881 transcription factor TF Family: AP2 hypothetical protein VITISV_034131 [Vitis vinifera]
19 Hb_001856_160 0.1655560581 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003106_230 0.1659637404 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]

Gene co-expression network

sample Hb_009615_100 Hb_009615_100 Hb_006153_130 Hb_006153_130 Hb_009615_100--Hb_006153_130 Hb_000411_050 Hb_000411_050 Hb_009615_100--Hb_000411_050 Hb_007625_030 Hb_007625_030 Hb_009615_100--Hb_007625_030 Hb_000210_140 Hb_000210_140 Hb_009615_100--Hb_000210_140 Hb_003025_150 Hb_003025_150 Hb_009615_100--Hb_003025_150 Hb_000847_050 Hb_000847_050 Hb_009615_100--Hb_000847_050 Hb_006153_130--Hb_000210_140 Hb_001856_160 Hb_001856_160 Hb_006153_130--Hb_001856_160 Hb_002236_010 Hb_002236_010 Hb_006153_130--Hb_002236_010 Hb_006153_130--Hb_007625_030 Hb_006153_130--Hb_000847_050 Hb_002450_180 Hb_002450_180 Hb_000411_050--Hb_002450_180 Hb_002078_250 Hb_002078_250 Hb_000411_050--Hb_002078_250 Hb_000411_050--Hb_000847_050 Hb_004544_090 Hb_004544_090 Hb_000411_050--Hb_004544_090 Hb_000454_200 Hb_000454_200 Hb_000411_050--Hb_000454_200 Hb_000679_260 Hb_000679_260 Hb_000411_050--Hb_000679_260 Hb_007625_030--Hb_002236_010 Hb_002553_070 Hb_002553_070 Hb_007625_030--Hb_002553_070 Hb_023956_010 Hb_023956_010 Hb_007625_030--Hb_023956_010 Hb_009627_020 Hb_009627_020 Hb_007625_030--Hb_009627_020 Hb_004079_100 Hb_004079_100 Hb_007625_030--Hb_004079_100 Hb_007625_030--Hb_000454_200 Hb_000210_140--Hb_001856_160 Hb_003847_050 Hb_003847_050 Hb_000210_140--Hb_003847_050 Hb_003788_010 Hb_003788_010 Hb_000210_140--Hb_003788_010 Hb_007943_020 Hb_007943_020 Hb_000210_140--Hb_007943_020 Hb_029260_010 Hb_029260_010 Hb_000210_140--Hb_029260_010 Hb_002324_040 Hb_002324_040 Hb_003025_150--Hb_002324_040 Hb_003579_040 Hb_003579_040 Hb_003025_150--Hb_003579_040 Hb_002324_050 Hb_002324_050 Hb_003025_150--Hb_002324_050 Hb_012727_010 Hb_012727_010 Hb_003025_150--Hb_012727_010 Hb_003025_150--Hb_002078_250 Hb_003656_170 Hb_003656_170 Hb_003025_150--Hb_003656_170 Hb_000847_050--Hb_000454_200 Hb_000847_050--Hb_002450_180 Hb_006934_020 Hb_006934_020 Hb_000847_050--Hb_006934_020 Hb_006634_090 Hb_006634_090 Hb_000847_050--Hb_006634_090 Hb_000497_100 Hb_000497_100 Hb_000847_050--Hb_000497_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.72885 0.44926 0.991082 0.0156236 0.101038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.059888 0 0.766959 0.31075

CAGE analysis