Hb_004448_030

Information

Type -
Description -
Location Contig4448: 26481-27125
Sequence    

Annotation

kegg
ID rcu:RCOM_1013150
description ring finger protein, putative
nr
ID XP_012091724.1
description PREDICTED: RING-H2 finger protein ATL40-like [Jatropha curcas]
swissprot
ID Q9SLC3
description E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41 PE=1 SV=1
trembl
ID A0A067JM25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21526 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase atl41-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004448_030 0.0 - - PREDICTED: RING-H2 finger protein ATL40-like [Jatropha curcas]
2 Hb_135392_010 0.0912966635 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
3 Hb_007491_010 0.1037229677 - - Spotted leaf protein, putative [Ricinus communis]
4 Hb_000120_700 0.1058737515 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
5 Hb_007417_020 0.1185305325 - - Reticuline oxidase precursor, putative [Ricinus communis]
6 Hb_021419_060 0.1230475837 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
7 Hb_001464_010 0.1309041117 - - PREDICTED: putative receptor-like protein kinase At4g00960 isoform X1 [Populus euphratica]
8 Hb_001379_020 0.1323810391 - - -
9 Hb_009780_060 0.1343087642 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
10 Hb_115007_010 0.1353172347 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
11 Hb_000155_140 0.1372769979 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_022115_030 0.1378715727 - - PREDICTED: umecyanin-like [Jatropha curcas]
13 Hb_058620_010 0.1382263942 - - cytochrome P450, putative [Ricinus communis]
14 Hb_001134_040 0.139263547 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
15 Hb_004097_080 0.1395001194 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
16 Hb_000229_080 0.1420871021 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
17 Hb_005171_060 0.1428482266 - - alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_000679_070 0.1428586184 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
19 Hb_011282_070 0.1455116806 - - ATP binding protein, putative [Ricinus communis]
20 Hb_023732_020 0.1474720829 - - PREDICTED: fatty acyl-CoA reductase 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_004448_030 Hb_004448_030 Hb_135392_010 Hb_135392_010 Hb_004448_030--Hb_135392_010 Hb_007491_010 Hb_007491_010 Hb_004448_030--Hb_007491_010 Hb_000120_700 Hb_000120_700 Hb_004448_030--Hb_000120_700 Hb_007417_020 Hb_007417_020 Hb_004448_030--Hb_007417_020 Hb_021419_060 Hb_021419_060 Hb_004448_030--Hb_021419_060 Hb_001464_010 Hb_001464_010 Hb_004448_030--Hb_001464_010 Hb_135392_010--Hb_007417_020 Hb_135392_010--Hb_007491_010 Hb_001134_040 Hb_001134_040 Hb_135392_010--Hb_001134_040 Hb_058620_010 Hb_058620_010 Hb_135392_010--Hb_058620_010 Hb_135392_010--Hb_001464_010 Hb_004097_080 Hb_004097_080 Hb_135392_010--Hb_004097_080 Hb_003237_040 Hb_003237_040 Hb_007491_010--Hb_003237_040 Hb_007491_010--Hb_007417_020 Hb_007491_010--Hb_001464_010 Hb_007491_010--Hb_004097_080 Hb_022115_030 Hb_022115_030 Hb_000120_700--Hb_022115_030 Hb_023732_020 Hb_023732_020 Hb_000120_700--Hb_023732_020 Hb_032717_030 Hb_032717_030 Hb_000120_700--Hb_032717_030 Hb_115007_010 Hb_115007_010 Hb_000120_700--Hb_115007_010 Hb_003073_020 Hb_003073_020 Hb_000120_700--Hb_003073_020 Hb_007417_020--Hb_001464_010 Hb_007417_020--Hb_001134_040 Hb_003090_070 Hb_003090_070 Hb_007417_020--Hb_003090_070 Hb_002805_230 Hb_002805_230 Hb_007417_020--Hb_002805_230 Hb_011282_070 Hb_011282_070 Hb_021419_060--Hb_011282_070 Hb_002917_010 Hb_002917_010 Hb_021419_060--Hb_002917_010 Hb_004463_040 Hb_004463_040 Hb_021419_060--Hb_004463_040 Hb_002048_010 Hb_002048_010 Hb_021419_060--Hb_002048_010 Hb_020332_040 Hb_020332_040 Hb_021419_060--Hb_020332_040 Hb_064398_010 Hb_064398_010 Hb_021419_060--Hb_064398_010 Hb_001464_010--Hb_001134_040 Hb_004055_180 Hb_004055_180 Hb_001464_010--Hb_004055_180 Hb_097908_010 Hb_097908_010 Hb_001464_010--Hb_097908_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.113119 0.0613929 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.62475 0.139692

CAGE analysis