Hb_000836_400

Information

Type -
Description -
Location Contig836: 327183-330135
Sequence    

Annotation

kegg
ID rcu:RCOM_1616520
description acc synthase, putative (EC:4.4.1.14)
nr
ID XP_012083309.1
description PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1 [Jatropha curcas]
swissprot
ID Q9MB95
description 1-aminocyclopropane-1-carboxylate synthase 1 OS=Prunus mume GN=ACS1 PE=2 SV=1
trembl
ID A0A067K9R6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14335 PE=3 SV=1
Gene Ontology
ID GO:0016847
description 1-aminocyclopropane-1-carboxylate synthase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59967: 327869-329433 , PASA_asmbl_59968: 329903-330133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_400 0.0 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1 [Jatropha curcas]
2 Hb_015146_010 0.0698570764 - - -
3 Hb_010697_030 0.0741181816 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
4 Hb_005614_040 0.0826148589 - - unnamed protein product [Coffea canephora]
5 Hb_000069_050 0.0917526979 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
6 Hb_007483_040 0.0919404544 - - PREDICTED: protein SRG1-like [Jatropha curcas]
7 Hb_000059_100 0.1057422547 - - Basic blue protein, putative [Ricinus communis]
8 Hb_000503_040 0.1077534166 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
9 Hb_020480_050 0.1077607106 - - putative wall-associated kinase family protein [Populus trichocarpa]
10 Hb_185391_010 0.1099646587 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
11 Hb_000127_250 0.1162518726 - - Alliin lyase precursor, putative [Ricinus communis]
12 Hb_001699_240 0.1186087108 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
13 Hb_012532_020 0.1190281941 - - Isoflavone reductase, putative [Ricinus communis]
14 Hb_009568_010 0.1210971581 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
15 Hb_000772_070 0.1211597057 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
16 Hb_058620_050 0.1229034726 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
17 Hb_000141_070 0.1258386327 - - l-lactate dehydrogenase, putative [Ricinus communis]
18 Hb_003090_070 0.1275974055 - - PREDICTED: laccase-7 [Jatropha curcas]
19 Hb_001652_060 0.1304305829 - - PREDICTED: uncharacterized protein LOC103404034 [Malus domestica]
20 Hb_078903_010 0.1326030134 - - Osmotin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000836_400 Hb_000836_400 Hb_015146_010 Hb_015146_010 Hb_000836_400--Hb_015146_010 Hb_010697_030 Hb_010697_030 Hb_000836_400--Hb_010697_030 Hb_005614_040 Hb_005614_040 Hb_000836_400--Hb_005614_040 Hb_000069_050 Hb_000069_050 Hb_000836_400--Hb_000069_050 Hb_007483_040 Hb_007483_040 Hb_000836_400--Hb_007483_040 Hb_000059_100 Hb_000059_100 Hb_000836_400--Hb_000059_100 Hb_185391_010 Hb_185391_010 Hb_015146_010--Hb_185391_010 Hb_000127_250 Hb_000127_250 Hb_015146_010--Hb_000127_250 Hb_015146_010--Hb_005614_040 Hb_000958_180 Hb_000958_180 Hb_015146_010--Hb_000958_180 Hb_012532_020 Hb_012532_020 Hb_015146_010--Hb_012532_020 Hb_010697_030--Hb_007483_040 Hb_020480_050 Hb_020480_050 Hb_010697_030--Hb_020480_050 Hb_000503_040 Hb_000503_040 Hb_010697_030--Hb_000503_040 Hb_000141_070 Hb_000141_070 Hb_010697_030--Hb_000141_070 Hb_009568_010 Hb_009568_010 Hb_010697_030--Hb_009568_010 Hb_005614_040--Hb_007483_040 Hb_005614_040--Hb_000059_100 Hb_005614_040--Hb_000503_040 Hb_005614_040--Hb_009568_010 Hb_001699_240 Hb_001699_240 Hb_005614_040--Hb_001699_240 Hb_005614_040--Hb_185391_010 Hb_000631_130 Hb_000631_130 Hb_000069_050--Hb_000631_130 Hb_000038_090 Hb_000038_090 Hb_000069_050--Hb_000038_090 Hb_007044_070 Hb_007044_070 Hb_000069_050--Hb_007044_070 Hb_000069_050--Hb_010697_030 Hb_008775_050 Hb_008775_050 Hb_000069_050--Hb_008775_050 Hb_007483_040--Hb_020480_050 Hb_007483_040--Hb_009568_010 Hb_007483_040--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_007483_040--Hb_003334_080 Hb_000712_070 Hb_000712_070 Hb_007483_040--Hb_000712_070 Hb_003090_070 Hb_003090_070 Hb_000059_100--Hb_003090_070 Hb_002805_230 Hb_002805_230 Hb_000059_100--Hb_002805_230 Hb_004693_010 Hb_004693_010 Hb_000059_100--Hb_004693_010 Hb_000318_440 Hb_000318_440 Hb_000059_100--Hb_000318_440 Hb_007532_050 Hb_007532_050 Hb_000059_100--Hb_007532_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0504276 0.490027 0.176053 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.02996 0

CAGE analysis