Hb_010695_020

Information

Type -
Description -
Location Contig10695: 31175-47292
Sequence    

Annotation

kegg
ID rcu:RCOM_0645430
description helicase, putative
nr
ID XP_012080959.1
description PREDICTED: superkiller viralicidic activity 2-like 2 [Jatropha curcas]
swissprot
ID Q9ZVW2
description Protein HUA ENHANCER 2 OS=Arabidopsis thaliana GN=HEN2 PE=1 SV=2
trembl
ID A0A067LM94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17082 PE=4 SV=1
Gene Ontology
ID GO:0005634
description superkiller viralicidic activity 2-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02117: 31161-47304 , PASA_asmbl_02118: 45622-46072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010695_020 0.0 - - PREDICTED: superkiller viralicidic activity 2-like 2 [Jatropha curcas]
2 Hb_002042_140 0.0621727089 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
3 Hb_000796_190 0.0716402236 - - hypothetical protein F383_31148 [Gossypium arboreum]
4 Hb_007558_120 0.0740413393 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
5 Hb_003299_070 0.0740784981 - - AMP deaminase [Theobroma cacao]
6 Hb_000160_290 0.079012448 - - unnamed protein product [Vitis vinifera]
7 Hb_003935_030 0.0793401175 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
8 Hb_001417_050 0.0800839285 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
9 Hb_000768_070 0.0826171372 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
10 Hb_005892_030 0.0843877961 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
11 Hb_000109_100 0.0847115992 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
12 Hb_006816_050 0.085266663 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
13 Hb_000002_040 0.0858600838 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
14 Hb_001454_320 0.0860123647 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
15 Hb_000291_060 0.0879470278 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
16 Hb_000418_140 0.0882660614 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
17 Hb_004128_050 0.0884505699 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
18 Hb_006252_020 0.0886748586 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
19 Hb_154114_010 0.0896864848 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
20 Hb_000743_040 0.0901406371 - - ribosomal RNA methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_010695_020 Hb_010695_020 Hb_002042_140 Hb_002042_140 Hb_010695_020--Hb_002042_140 Hb_000796_190 Hb_000796_190 Hb_010695_020--Hb_000796_190 Hb_007558_120 Hb_007558_120 Hb_010695_020--Hb_007558_120 Hb_003299_070 Hb_003299_070 Hb_010695_020--Hb_003299_070 Hb_000160_290 Hb_000160_290 Hb_010695_020--Hb_000160_290 Hb_003935_030 Hb_003935_030 Hb_010695_020--Hb_003935_030 Hb_006831_110 Hb_006831_110 Hb_002042_140--Hb_006831_110 Hb_000002_040 Hb_000002_040 Hb_002042_140--Hb_000002_040 Hb_004128_050 Hb_004128_050 Hb_002042_140--Hb_004128_050 Hb_000743_040 Hb_000743_040 Hb_002042_140--Hb_000743_040 Hb_002042_140--Hb_007558_120 Hb_000796_190--Hb_007558_120 Hb_003124_130 Hb_003124_130 Hb_000796_190--Hb_003124_130 Hb_000329_130 Hb_000329_130 Hb_000796_190--Hb_000329_130 Hb_002174_020 Hb_002174_020 Hb_000796_190--Hb_002174_020 Hb_000300_360 Hb_000300_360 Hb_000796_190--Hb_000300_360 Hb_001454_320 Hb_001454_320 Hb_000796_190--Hb_001454_320 Hb_003680_230 Hb_003680_230 Hb_007558_120--Hb_003680_230 Hb_007558_120--Hb_000329_130 Hb_006816_050 Hb_006816_050 Hb_007558_120--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_007558_120--Hb_004635_050 Hb_003299_070--Hb_003935_030 Hb_003299_070--Hb_001454_320 Hb_185679_010 Hb_185679_010 Hb_003299_070--Hb_185679_010 Hb_000109_100 Hb_000109_100 Hb_003299_070--Hb_000109_100 Hb_002163_010 Hb_002163_010 Hb_003299_070--Hb_002163_010 Hb_000160_290--Hb_002174_020 Hb_000922_370 Hb_000922_370 Hb_000160_290--Hb_000922_370 Hb_001417_050 Hb_001417_050 Hb_000160_290--Hb_001417_050 Hb_002235_160 Hb_002235_160 Hb_000160_290--Hb_002235_160 Hb_003044_020 Hb_003044_020 Hb_000160_290--Hb_003044_020 Hb_001493_040 Hb_001493_040 Hb_000160_290--Hb_001493_040 Hb_005494_020 Hb_005494_020 Hb_003935_030--Hb_005494_020 Hb_000567_010 Hb_000567_010 Hb_003935_030--Hb_000567_010 Hb_003428_070 Hb_003428_070 Hb_003935_030--Hb_003428_070 Hb_002304_090 Hb_002304_090 Hb_003935_030--Hb_002304_090 Hb_000768_110 Hb_000768_110 Hb_003935_030--Hb_000768_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.4191 31.7385 17.5758 13.3066 33.0382 40.552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.5227 11.1299 12.7426 17.2911 16.7786

CAGE analysis