Hb_000139_370

Information

Type -
Description -
Location Contig139: 382545-392019
Sequence    

Annotation

kegg
ID rcu:RCOM_0913520
description ubiquitin-activating enzyme E1c, putative
nr
ID XP_002517184.1
description ubiquitin-activating enzyme E1c, putative [Ricinus communis]
swissprot
ID O65041
description NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana GN=ECR1 PE=1 SV=2
trembl
ID B9RTW5
description Ubiquitin-activating enzyme E1c, putative OS=Ricinus communis GN=RCOM_0913520 PE=4 SV=1
Gene Ontology
ID GO:0005524
description nedd8-activating enzyme e1 catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10666: 382616-387011 , PASA_asmbl_10667: 388123-391064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_370 0.0 - - ubiquitin-activating enzyme E1c, putative [Ricinus communis]
2 Hb_172632_040 0.056456631 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 isoform X1 [Amborella trichopoda]
3 Hb_003375_070 0.0653897181 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
4 Hb_000915_260 0.0776442865 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
5 Hb_010174_040 0.0806781426 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
6 Hb_007632_240 0.0813031553 - - transporter, putative [Ricinus communis]
7 Hb_002273_120 0.0850602851 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
8 Hb_000254_090 0.0851177008 - - PREDICTED: la protein 2 [Jatropha curcas]
9 Hb_001442_040 0.0856482563 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]
10 Hb_168978_030 0.086446569 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
11 Hb_003847_130 0.0870154825 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
12 Hb_002092_130 0.0879160274 - - PREDICTED: protein CASP-like [Oryza brachyantha]
13 Hb_000617_180 0.0884957495 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
14 Hb_000466_140 0.0888563518 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
15 Hb_001141_020 0.0899636215 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
16 Hb_002044_150 0.0907446154 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
17 Hb_002301_300 0.0917750085 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
18 Hb_001301_100 0.0923003452 - - transporter, putative [Ricinus communis]
19 Hb_000008_290 0.0923384335 - - PREDICTED: protein SAND [Jatropha curcas]
20 Hb_011930_160 0.0925960613 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]

Gene co-expression network

sample Hb_000139_370 Hb_000139_370 Hb_172632_040 Hb_172632_040 Hb_000139_370--Hb_172632_040 Hb_003375_070 Hb_003375_070 Hb_000139_370--Hb_003375_070 Hb_000915_260 Hb_000915_260 Hb_000139_370--Hb_000915_260 Hb_010174_040 Hb_010174_040 Hb_000139_370--Hb_010174_040 Hb_007632_240 Hb_007632_240 Hb_000139_370--Hb_007632_240 Hb_002273_120 Hb_002273_120 Hb_000139_370--Hb_002273_120 Hb_001898_210 Hb_001898_210 Hb_172632_040--Hb_001898_210 Hb_172632_040--Hb_000915_260 Hb_000362_150 Hb_000362_150 Hb_172632_040--Hb_000362_150 Hb_000254_090 Hb_000254_090 Hb_172632_040--Hb_000254_090 Hb_000110_190 Hb_000110_190 Hb_172632_040--Hb_000110_190 Hb_001135_220 Hb_001135_220 Hb_003375_070--Hb_001135_220 Hb_011930_160 Hb_011930_160 Hb_003375_070--Hb_011930_160 Hb_003375_070--Hb_002273_120 Hb_003025_110 Hb_003025_110 Hb_003375_070--Hb_003025_110 Hb_003375_070--Hb_007632_240 Hb_009898_050 Hb_009898_050 Hb_000915_260--Hb_009898_050 Hb_002276_170 Hb_002276_170 Hb_000915_260--Hb_002276_170 Hb_001141_020 Hb_001141_020 Hb_000915_260--Hb_001141_020 Hb_168978_030 Hb_168978_030 Hb_000915_260--Hb_168978_030 Hb_006153_070 Hb_006153_070 Hb_000915_260--Hb_006153_070 Hb_001205_120 Hb_001205_120 Hb_000915_260--Hb_001205_120 Hb_003645_060 Hb_003645_060 Hb_010174_040--Hb_003645_060 Hb_000592_030 Hb_000592_030 Hb_010174_040--Hb_000592_030 Hb_000617_180 Hb_000617_180 Hb_010174_040--Hb_000617_180 Hb_002909_140 Hb_002909_140 Hb_010174_040--Hb_002909_140 Hb_001655_030 Hb_001655_030 Hb_010174_040--Hb_001655_030 Hb_143629_110 Hb_143629_110 Hb_010174_040--Hb_143629_110 Hb_003847_130 Hb_003847_130 Hb_007632_240--Hb_003847_130 Hb_000638_120 Hb_000638_120 Hb_007632_240--Hb_000638_120 Hb_003438_050 Hb_003438_050 Hb_007632_240--Hb_003438_050 Hb_007632_240--Hb_003025_110 Hb_004410_030 Hb_004410_030 Hb_007632_240--Hb_004410_030 Hb_009529_030 Hb_009529_030 Hb_002273_120--Hb_009529_030 Hb_002785_050 Hb_002785_050 Hb_002273_120--Hb_002785_050 Hb_003010_020 Hb_003010_020 Hb_002273_120--Hb_003010_020 Hb_032050_040 Hb_032050_040 Hb_002273_120--Hb_032050_040 Hb_017295_010 Hb_017295_010 Hb_002273_120--Hb_017295_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2829 7.11619 11.8743 15.2712 22.496 21.4863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9904 9.83525 13.7542 21.3329 20.2337

CAGE analysis