Hb_000544_090

Information

Type -
Description -
Location Contig544: 118582-125510
Sequence    

Annotation

kegg
ID rcu:RCOM_0171060
description Golgin-84, putative
nr
ID XP_012068453.1
description PREDICTED: golgin candidate 2 [Jatropha curcas]
swissprot
ID B0F9L7
description Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1
trembl
ID A0A067LAL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03635 PE=4 SV=1
Gene Ontology
ID GO:0050896
description golgin candidate 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47929: 118590-125778 , PASA_asmbl_47930: 119431-125778 , PASA_asmbl_47931: 123074-124728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_090 0.0 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
2 Hb_023480_010 0.0645691133 - - cellular nucleic acid binding protein, putative [Ricinus communis]
3 Hb_005993_050 0.0726840106 - - Protein AFR, putative [Ricinus communis]
4 Hb_003609_030 0.0756803896 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
5 Hb_008406_200 0.0805528094 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
6 Hb_000915_020 0.0821208191 - - unnamed protein product [Vitis vinifera]
7 Hb_000457_260 0.082338744 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
8 Hb_000020_190 0.0828172481 - - hypothetical protein RCOM_0452240 [Ricinus communis]
9 Hb_000983_150 0.0834694423 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
10 Hb_002045_240 0.0852154088 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
11 Hb_001329_140 0.0856807832 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
12 Hb_000562_090 0.0860653881 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
13 Hb_006831_110 0.087047855 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
14 Hb_011030_010 0.0873856233 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
15 Hb_000100_180 0.0877143486 - - PREDICTED: probable acyl-activating enzyme 16, chloroplastic [Jatropha curcas]
16 Hb_009548_020 0.0878186591 - - structural constituent of cell wall, putative [Ricinus communis]
17 Hb_007075_040 0.0885436742 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
18 Hb_008246_040 0.0896604456 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
19 Hb_000777_050 0.0899718747 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
20 Hb_003680_150 0.0900332004 - - srpk, putative [Ricinus communis]

Gene co-expression network

sample Hb_000544_090 Hb_000544_090 Hb_023480_010 Hb_023480_010 Hb_000544_090--Hb_023480_010 Hb_005993_050 Hb_005993_050 Hb_000544_090--Hb_005993_050 Hb_003609_030 Hb_003609_030 Hb_000544_090--Hb_003609_030 Hb_008406_200 Hb_008406_200 Hb_000544_090--Hb_008406_200 Hb_000915_020 Hb_000915_020 Hb_000544_090--Hb_000915_020 Hb_000457_260 Hb_000457_260 Hb_000544_090--Hb_000457_260 Hb_003680_150 Hb_003680_150 Hb_023480_010--Hb_003680_150 Hb_000983_150 Hb_000983_150 Hb_023480_010--Hb_000983_150 Hb_002684_040 Hb_002684_040 Hb_023480_010--Hb_002684_040 Hb_003025_110 Hb_003025_110 Hb_023480_010--Hb_003025_110 Hb_000853_230 Hb_000853_230 Hb_023480_010--Hb_000853_230 Hb_000029_050 Hb_000029_050 Hb_005993_050--Hb_000029_050 Hb_138596_010 Hb_138596_010 Hb_005993_050--Hb_138596_010 Hb_004055_150 Hb_004055_150 Hb_005993_050--Hb_004055_150 Hb_005993_050--Hb_003609_030 Hb_005993_050--Hb_003680_150 Hb_005993_050--Hb_000853_230 Hb_000562_090 Hb_000562_090 Hb_003609_030--Hb_000562_090 Hb_001252_010 Hb_001252_010 Hb_003609_030--Hb_001252_010 Hb_031527_020 Hb_031527_020 Hb_003609_030--Hb_031527_020 Hb_000179_030 Hb_000179_030 Hb_003609_030--Hb_000179_030 Hb_000502_050 Hb_000502_050 Hb_003609_030--Hb_000502_050 Hb_016172_020 Hb_016172_020 Hb_008406_200--Hb_016172_020 Hb_001409_020 Hb_001409_020 Hb_008406_200--Hb_001409_020 Hb_005653_090 Hb_005653_090 Hb_008406_200--Hb_005653_090 Hb_000345_380 Hb_000345_380 Hb_008406_200--Hb_000345_380 Hb_000484_030 Hb_000484_030 Hb_008406_200--Hb_000484_030 Hb_000343_250 Hb_000343_250 Hb_008406_200--Hb_000343_250 Hb_008246_040 Hb_008246_040 Hb_000915_020--Hb_008246_040 Hb_000915_020--Hb_001409_020 Hb_014497_050 Hb_014497_050 Hb_000915_020--Hb_014497_050 Hb_011671_430 Hb_011671_430 Hb_000915_020--Hb_011671_430 Hb_000308_030 Hb_000308_030 Hb_000915_020--Hb_000308_030 Hb_000915_020--Hb_005993_050 Hb_000347_180 Hb_000347_180 Hb_000457_260--Hb_000347_180 Hb_004935_030 Hb_004935_030 Hb_000457_260--Hb_004935_030 Hb_123352_020 Hb_123352_020 Hb_000457_260--Hb_123352_020 Hb_003362_070 Hb_003362_070 Hb_000457_260--Hb_003362_070 Hb_172632_080 Hb_172632_080 Hb_000457_260--Hb_172632_080 Hb_001700_040 Hb_001700_040 Hb_000457_260--Hb_001700_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.7012 28.4299 21.2682 22.8238 23.205 45.663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1845 17.2997 27.6392 19.4456 25.4

CAGE analysis