Hb_000220_050

Information

Type transcription factor
Description TF Family: Orphans
Location Contig220: 88877-96123
Sequence    

Annotation

kegg
ID cit:102612017
description putative zinc finger protein At1g68190-like
nr
ID XP_012075709.1
description PREDICTED: putative zinc finger protein At1g68190 isoform X1 [Jatropha curcas]
swissprot
ID Q9C9F4
description Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1
trembl
ID A0A061E5V4
description B-box zinc finger family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_009367 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22640: 90936-91887
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_050 0.0 transcription factor TF Family: Orphans PREDICTED: putative zinc finger protein At1g68190 isoform X1 [Jatropha curcas]
2 Hb_003408_020 0.0674020375 - - hypothetical protein RCOM_0453040 [Ricinus communis]
3 Hb_003175_040 0.096904089 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
4 Hb_000317_030 0.1041407714 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
5 Hb_000089_160 0.1048362678 - - 60S ribosomal protein L5B [Hevea brasiliensis]
6 Hb_000061_320 0.1055875014 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
7 Hb_000922_270 0.1104144096 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
8 Hb_003226_280 0.111211684 - - PREDICTED: peter Pan-like protein [Populus euphratica]
9 Hb_000671_090 0.1117581539 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
10 Hb_000010_470 0.1122180352 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
11 Hb_001688_020 0.1142359096 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
12 Hb_044662_070 0.1173292631 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
13 Hb_000010_460 0.1180959021 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
14 Hb_007479_020 0.1181677711 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
15 Hb_002681_110 0.1187805175 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
16 Hb_001691_210 0.1189044142 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
17 Hb_004994_170 0.1195195684 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
18 Hb_001722_100 0.1195638942 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001832_010 0.1199015443 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
20 Hb_001257_080 0.1216044698 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000220_050 Hb_000220_050 Hb_003408_020 Hb_003408_020 Hb_000220_050--Hb_003408_020 Hb_003175_040 Hb_003175_040 Hb_000220_050--Hb_003175_040 Hb_000317_030 Hb_000317_030 Hb_000220_050--Hb_000317_030 Hb_000089_160 Hb_000089_160 Hb_000220_050--Hb_000089_160 Hb_000061_320 Hb_000061_320 Hb_000220_050--Hb_000061_320 Hb_000922_270 Hb_000922_270 Hb_000220_050--Hb_000922_270 Hb_003408_020--Hb_003175_040 Hb_003408_020--Hb_000922_270 Hb_044662_070 Hb_044662_070 Hb_003408_020--Hb_044662_070 Hb_001863_480 Hb_001863_480 Hb_003408_020--Hb_001863_480 Hb_002527_070 Hb_002527_070 Hb_003408_020--Hb_002527_070 Hb_004108_230 Hb_004108_230 Hb_003175_040--Hb_004108_230 Hb_002918_200 Hb_002918_200 Hb_003175_040--Hb_002918_200 Hb_004837_140 Hb_004837_140 Hb_003175_040--Hb_004837_140 Hb_001691_210 Hb_001691_210 Hb_003175_040--Hb_001691_210 Hb_002716_070 Hb_002716_070 Hb_003175_040--Hb_002716_070 Hb_000576_010 Hb_000576_010 Hb_000317_030--Hb_000576_010 Hb_004994_170 Hb_004994_170 Hb_000317_030--Hb_004994_170 Hb_001671_080 Hb_001671_080 Hb_000317_030--Hb_001671_080 Hb_002681_110 Hb_002681_110 Hb_000317_030--Hb_002681_110 Hb_004223_130 Hb_004223_130 Hb_000317_030--Hb_004223_130 Hb_000317_030--Hb_002527_070 Hb_000089_160--Hb_001691_210 Hb_001718_100 Hb_001718_100 Hb_000089_160--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_000089_160--Hb_000086_570 Hb_001427_120 Hb_001427_120 Hb_000089_160--Hb_001427_120 Hb_000030_100 Hb_000030_100 Hb_000089_160--Hb_000030_100 Hb_000089_160--Hb_003175_040 Hb_012338_010 Hb_012338_010 Hb_000061_320--Hb_012338_010 Hb_009954_040 Hb_009954_040 Hb_000061_320--Hb_009954_040 Hb_000061_320--Hb_003175_040 Hb_000300_610 Hb_000300_610 Hb_000061_320--Hb_000300_610 Hb_003020_230 Hb_003020_230 Hb_000061_320--Hb_003020_230 Hb_026527_030 Hb_026527_030 Hb_000061_320--Hb_026527_030 Hb_007666_020 Hb_007666_020 Hb_000922_270--Hb_007666_020 Hb_010172_070 Hb_010172_070 Hb_000922_270--Hb_010172_070 Hb_001711_030 Hb_001711_030 Hb_000922_270--Hb_001711_030 Hb_000051_040 Hb_000051_040 Hb_000922_270--Hb_000051_040 Hb_014720_080 Hb_014720_080 Hb_000922_270--Hb_014720_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2325 1.9519 5.77771 3.00657 9.39745 10.7989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0946 15.9882 16.5146 10.4702 1.49192

CAGE analysis