Hb_000505_040

Information

Type -
Description -
Location Contig505: 28910-32211
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45995: 30569-30935 , PASA_asmbl_45996: 30942-31239 , PASA_asmbl_45997: 31524-32187
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000505_040 0.0 - - -
2 Hb_001512_030 0.0620247075 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
3 Hb_001633_050 0.0737354171 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
4 Hb_157022_010 0.0837289812 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
5 Hb_000236_040 0.0841806901 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
6 Hb_001484_070 0.0848795112 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000270_370 0.0867055647 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
8 Hb_001140_060 0.0878720752 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
9 Hb_101705_030 0.0885528511 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
10 Hb_009182_010 0.0886091445 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
11 Hb_007441_040 0.0886437016 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
12 Hb_001221_210 0.0900356836 - - thiF family protein [Populus trichocarpa]
13 Hb_005784_110 0.0923294675 - - PREDICTED: dolichol-phosphate mannosyltransferase-like isoform X1 [Citrus sinensis]
14 Hb_002995_020 0.0926570207 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
15 Hb_000671_090 0.0939700282 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
16 Hb_000403_060 0.0958959023 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
17 Hb_004116_190 0.0963710159 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
18 Hb_000221_160 0.098113431 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
19 Hb_004767_080 0.098626892 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
20 Hb_158467_010 0.0991824783 - - transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000505_040 Hb_000505_040 Hb_001512_030 Hb_001512_030 Hb_000505_040--Hb_001512_030 Hb_001633_050 Hb_001633_050 Hb_000505_040--Hb_001633_050 Hb_157022_010 Hb_157022_010 Hb_000505_040--Hb_157022_010 Hb_000236_040 Hb_000236_040 Hb_000505_040--Hb_000236_040 Hb_001484_070 Hb_001484_070 Hb_000505_040--Hb_001484_070 Hb_000270_370 Hb_000270_370 Hb_000505_040--Hb_000270_370 Hb_001512_030--Hb_001633_050 Hb_007904_260 Hb_007904_260 Hb_001512_030--Hb_007904_260 Hb_000985_030 Hb_000985_030 Hb_001512_030--Hb_000985_030 Hb_003605_090 Hb_003605_090 Hb_001512_030--Hb_003605_090 Hb_004889_010 Hb_004889_010 Hb_001512_030--Hb_004889_010 Hb_004116_190 Hb_004116_190 Hb_001633_050--Hb_004116_190 Hb_000777_040 Hb_000777_040 Hb_001633_050--Hb_000777_040 Hb_002995_020 Hb_002995_020 Hb_001633_050--Hb_002995_020 Hb_000504_140 Hb_000504_140 Hb_001633_050--Hb_000504_140 Hb_000656_240 Hb_000656_240 Hb_001633_050--Hb_000656_240 Hb_004889_020 Hb_004889_020 Hb_157022_010--Hb_004889_020 Hb_000403_060 Hb_000403_060 Hb_157022_010--Hb_000403_060 Hb_157022_010--Hb_001484_070 Hb_157022_010--Hb_000236_040 Hb_026889_030 Hb_026889_030 Hb_157022_010--Hb_026889_030 Hb_000827_050 Hb_000827_050 Hb_157022_010--Hb_000827_050 Hb_000236_040--Hb_000827_050 Hb_000205_090 Hb_000205_090 Hb_000236_040--Hb_000205_090 Hb_000236_040--Hb_001633_050 Hb_002014_020 Hb_002014_020 Hb_000236_040--Hb_002014_020 Hb_003304_020 Hb_003304_020 Hb_000236_040--Hb_003304_020 Hb_004058_030 Hb_004058_030 Hb_000236_040--Hb_004058_030 Hb_000920_110 Hb_000920_110 Hb_001484_070--Hb_000920_110 Hb_000453_120 Hb_000453_120 Hb_001484_070--Hb_000453_120 Hb_000261_140 Hb_000261_140 Hb_001484_070--Hb_000261_140 Hb_001979_040 Hb_001979_040 Hb_001484_070--Hb_001979_040 Hb_001085_120 Hb_001085_120 Hb_001484_070--Hb_001085_120 Hb_002056_050 Hb_002056_050 Hb_001484_070--Hb_002056_050 Hb_027073_040 Hb_027073_040 Hb_000270_370--Hb_027073_040 Hb_000221_160 Hb_000221_160 Hb_000270_370--Hb_000221_160 Hb_000373_120 Hb_000373_120 Hb_000270_370--Hb_000373_120 Hb_000979_230 Hb_000979_230 Hb_000270_370--Hb_000979_230 Hb_000671_090 Hb_000671_090 Hb_000270_370--Hb_000671_090 Hb_033834_040 Hb_033834_040 Hb_000270_370--Hb_033834_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6874 6.86827 19.8365 18.8166 16.2824 23.8953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.9586 48.8444 38.3499 25.0601 10.9193

CAGE analysis