Hb_032531_030

Information

Type -
Description -
Location Contig32531: 37247-44376
Sequence    

Annotation

kegg
ID rcu:RCOM_1365970
description Williams-Beuren syndrome chromosome region 16 protein, putative
nr
ID XP_012065455.1
description PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID A0A067L5F9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25145 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34281: 37242-71735 , PASA_asmbl_34282: 37343-71630
cDNA
(Sanger)
(ID:Location)		 027_K16.ab1: 37242-44296 , 033_P21.ab1: 37242-44341

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032531_030 0.0 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
2 Hb_066807_010 0.0986106257 - - PREDICTED: uncharacterized protein LOC105628412 [Jatropha curcas]
3 Hb_014834_120 0.0988394586 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
4 Hb_001902_050 0.1019781715 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
5 Hb_002038_060 0.1067594513 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
6 Hb_000057_060 0.1075296222 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
7 Hb_026048_100 0.1096018951 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
8 Hb_000700_090 0.1103299992 - - protein with unknown function [Ricinus communis]
9 Hb_098709_010 0.1157796412 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
10 Hb_034083_010 0.1166890211 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004126_010 0.1171772973 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
12 Hb_009510_030 0.1188977654 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
13 Hb_000365_360 0.1205029733 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_002942_030 0.1224026086 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
15 Hb_001842_070 0.1227116831 - - PREDICTED: uncharacterized protein LOC105637106 [Jatropha curcas]
16 Hb_006602_020 0.1227171698 - - unknown [Medicago truncatula]
17 Hb_000599_120 0.1230923177 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
18 Hb_005488_070 0.1257017436 - - putative cytochrome P450 [Oryza sativa Japonica Group]
19 Hb_000984_180 0.1272200492 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
20 Hb_002506_010 0.1298128739 - - choline transporter-related family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_032531_030 Hb_032531_030 Hb_066807_010 Hb_066807_010 Hb_032531_030--Hb_066807_010 Hb_014834_120 Hb_014834_120 Hb_032531_030--Hb_014834_120 Hb_001902_050 Hb_001902_050 Hb_032531_030--Hb_001902_050 Hb_002038_060 Hb_002038_060 Hb_032531_030--Hb_002038_060 Hb_000057_060 Hb_000057_060 Hb_032531_030--Hb_000057_060 Hb_026048_100 Hb_026048_100 Hb_032531_030--Hb_026048_100 Hb_066807_010--Hb_026048_100 Hb_002681_140 Hb_002681_140 Hb_066807_010--Hb_002681_140 Hb_004852_030 Hb_004852_030 Hb_066807_010--Hb_004852_030 Hb_000365_360 Hb_000365_360 Hb_066807_010--Hb_000365_360 Hb_066807_010--Hb_001902_050 Hb_001842_070 Hb_001842_070 Hb_014834_120--Hb_001842_070 Hb_001476_100 Hb_001476_100 Hb_014834_120--Hb_001476_100 Hb_002506_010 Hb_002506_010 Hb_014834_120--Hb_002506_010 Hb_009510_030 Hb_009510_030 Hb_014834_120--Hb_009510_030 Hb_014834_120--Hb_000057_060 Hb_000700_090 Hb_000700_090 Hb_001902_050--Hb_000700_090 Hb_005539_290 Hb_005539_290 Hb_001902_050--Hb_005539_290 Hb_006602_020 Hb_006602_020 Hb_001902_050--Hb_006602_020 Hb_001902_050--Hb_000365_360 Hb_004735_010 Hb_004735_010 Hb_001902_050--Hb_004735_010 Hb_001902_050--Hb_026048_100 Hb_103873_010 Hb_103873_010 Hb_002038_060--Hb_103873_010 Hb_003001_030 Hb_003001_030 Hb_002038_060--Hb_003001_030 Hb_004126_010 Hb_004126_010 Hb_002038_060--Hb_004126_010 Hb_014067_010 Hb_014067_010 Hb_002038_060--Hb_014067_010 Hb_002038_060--Hb_009510_030 Hb_001999_060 Hb_001999_060 Hb_002038_060--Hb_001999_060 Hb_001433_170 Hb_001433_170 Hb_000057_060--Hb_001433_170 Hb_000057_060--Hb_009510_030 Hb_003404_030 Hb_003404_030 Hb_000057_060--Hb_003404_030 Hb_000771_140 Hb_000771_140 Hb_000057_060--Hb_000771_140 Hb_127979_010 Hb_127979_010 Hb_000057_060--Hb_127979_010 Hb_000057_060--Hb_002506_010 Hb_003638_030 Hb_003638_030 Hb_026048_100--Hb_003638_030 Hb_026048_100--Hb_006602_020 Hb_026048_100--Hb_000700_090 Hb_026048_100--Hb_000057_060 Hb_000172_400 Hb_000172_400 Hb_026048_100--Hb_000172_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.0722 7.61176 3.3681 6.90637 101.447 132.749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.5686 56.5167 71.6799 10.5625 12.2153

CAGE analysis