Hb_000774_020

Information

Type -
Description -
Location Contig774: 59654-77382
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16890g
description ubiquitin family protein
nr
ID XP_012078499.1
description PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
swissprot
ID A1DCU5
description DNA damage-inducible protein 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ddi1 PE=3 SV=1
trembl
ID A0A067KC81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13183 PE=4 SV=1
Gene Ontology
ID GO:0004190
description dna damage-inducible protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57714: 59787-77341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000774_020 0.0 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
2 Hb_005271_040 0.0731028489 - - PREDICTED: serine racemase [Jatropha curcas]
3 Hb_002681_100 0.0749378039 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
4 Hb_000076_220 0.0749610099 - - thioredoxin domain-containing protein, putative [Ricinus communis]
5 Hb_010578_080 0.0792402775 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
6 Hb_000853_150 0.0800458801 - - Fumarase 1 isoform 2 [Theobroma cacao]
7 Hb_000260_470 0.0817754119 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
8 Hb_003119_060 0.0819057982 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
9 Hb_000920_200 0.082542108 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
10 Hb_001195_060 0.0834879113 - - Protein yrdA, putative [Ricinus communis]
11 Hb_018790_020 0.0861624932 - - protein kinase, putative [Ricinus communis]
12 Hb_000080_130 0.0883062383 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
13 Hb_000140_090 0.0898182948 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
14 Hb_000392_420 0.0900882415 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
15 Hb_005167_010 0.0920360322 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
16 Hb_000663_060 0.0922440022 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
17 Hb_006132_090 0.0923109454 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
18 Hb_003057_060 0.0928023005 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005765_050 0.0954500728 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
20 Hb_003861_060 0.0958026879 - - PREDICTED: treacle protein [Jatropha curcas]

Gene co-expression network

sample Hb_000774_020 Hb_000774_020 Hb_005271_040 Hb_005271_040 Hb_000774_020--Hb_005271_040 Hb_002681_100 Hb_002681_100 Hb_000774_020--Hb_002681_100 Hb_000076_220 Hb_000076_220 Hb_000774_020--Hb_000076_220 Hb_010578_080 Hb_010578_080 Hb_000774_020--Hb_010578_080 Hb_000853_150 Hb_000853_150 Hb_000774_020--Hb_000853_150 Hb_000260_470 Hb_000260_470 Hb_000774_020--Hb_000260_470 Hb_005271_040--Hb_000260_470 Hb_000875_080 Hb_000875_080 Hb_005271_040--Hb_000875_080 Hb_163175_010 Hb_163175_010 Hb_005271_040--Hb_163175_010 Hb_005271_040--Hb_002681_100 Hb_000663_060 Hb_000663_060 Hb_005271_040--Hb_000663_060 Hb_002272_050 Hb_002272_050 Hb_005271_040--Hb_002272_050 Hb_003057_060 Hb_003057_060 Hb_002681_100--Hb_003057_060 Hb_013575_010 Hb_013575_010 Hb_002681_100--Hb_013575_010 Hb_004058_030 Hb_004058_030 Hb_002681_100--Hb_004058_030 Hb_001511_060 Hb_001511_060 Hb_002681_100--Hb_001511_060 Hb_003304_020 Hb_003304_020 Hb_002681_100--Hb_003304_020 Hb_006573_190 Hb_006573_190 Hb_002681_100--Hb_006573_190 Hb_003058_120 Hb_003058_120 Hb_000076_220--Hb_003058_120 Hb_000076_220--Hb_000853_150 Hb_006846_130 Hb_006846_130 Hb_000076_220--Hb_006846_130 Hb_000130_270 Hb_000130_270 Hb_000076_220--Hb_000130_270 Hb_000076_220--Hb_000260_470 Hb_062226_130 Hb_062226_130 Hb_010578_080--Hb_062226_130 Hb_009296_070 Hb_009296_070 Hb_010578_080--Hb_009296_070 Hb_004712_210 Hb_004712_210 Hb_010578_080--Hb_004712_210 Hb_000392_420 Hb_000392_420 Hb_010578_080--Hb_000392_420 Hb_002534_100 Hb_002534_100 Hb_010578_080--Hb_002534_100 Hb_000365_230 Hb_000365_230 Hb_010578_080--Hb_000365_230 Hb_000853_150--Hb_003058_120 Hb_001218_030 Hb_001218_030 Hb_000853_150--Hb_001218_030 Hb_005588_060 Hb_005588_060 Hb_000853_150--Hb_005588_060 Hb_001828_150 Hb_001828_150 Hb_000853_150--Hb_001828_150 Hb_000460_030 Hb_000460_030 Hb_000853_150--Hb_000460_030 Hb_001660_100 Hb_001660_100 Hb_000260_470--Hb_001660_100 Hb_006570_160 Hb_006570_160 Hb_000260_470--Hb_006570_160 Hb_159809_070 Hb_159809_070 Hb_000260_470--Hb_159809_070 Hb_079526_040 Hb_079526_040 Hb_000260_470--Hb_079526_040 Hb_000260_470--Hb_000392_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4984 9.69973 27.0049 21.3889 9.70942 8.96237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3179 19.519 20.3521 17.3376 13.7857

CAGE analysis