Hb_000409_030

Information

Type -
Description -
Location Contig409: 126901-128940
Sequence    

Annotation

kegg
ID pop:POPTR_0004s12285g
description POPTRDRAFT_712806; hypothetical protein
nr
ID XP_012082994.1
description PREDICTED: uncharacterized protein LOC105642693 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LM44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09728 PE=4 SV=1
Gene Ontology
ID GO:0005783
description PREDICTED: uncharacterized protein LOC105642693

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40396: 127066-129134
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000409_030 0.0 - - PREDICTED: uncharacterized protein LOC105642693 [Jatropha curcas]
2 Hb_004679_030 0.0812306693 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
3 Hb_000941_150 0.0822229744 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
4 Hb_002768_060 0.0839976289 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
5 Hb_000976_100 0.0854500118 - - eukaryotic translation elongation factor, putative [Ricinus communis]
6 Hb_009296_080 0.0864418565 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
7 Hb_012114_100 0.0872259541 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
8 Hb_001789_150 0.0874066666 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
9 Hb_003544_160 0.0877688835 - - -
10 Hb_002874_110 0.089757936 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
11 Hb_001876_010 0.0906863442 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
12 Hb_000684_210 0.0912284614 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
13 Hb_001916_090 0.091479728 - - beta-1,2-n-acetylglucosaminyltransferase II, putative [Ricinus communis]
14 Hb_043792_040 0.0922548333 - - hypothetical protein, partial [Rosa rugosa]
15 Hb_001936_130 0.0944381799 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
16 Hb_001440_020 0.0949829771 - - exocyst componenet sec8, putative [Ricinus communis]
17 Hb_003206_110 0.0955627331 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
18 Hb_138585_080 0.0959104343 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
19 Hb_000069_210 0.0960677312 - - PREDICTED: exportin-2 [Jatropha curcas]
20 Hb_000809_230 0.0961755074 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000409_030 Hb_000409_030 Hb_004679_030 Hb_004679_030 Hb_000409_030--Hb_004679_030 Hb_000941_150 Hb_000941_150 Hb_000409_030--Hb_000941_150 Hb_002768_060 Hb_002768_060 Hb_000409_030--Hb_002768_060 Hb_000976_100 Hb_000976_100 Hb_000409_030--Hb_000976_100 Hb_009296_080 Hb_009296_080 Hb_000409_030--Hb_009296_080 Hb_012114_100 Hb_012114_100 Hb_000409_030--Hb_012114_100 Hb_000809_230 Hb_000809_230 Hb_004679_030--Hb_000809_230 Hb_003544_160 Hb_003544_160 Hb_004679_030--Hb_003544_160 Hb_009296_040 Hb_009296_040 Hb_004679_030--Hb_009296_040 Hb_001377_350 Hb_001377_350 Hb_004679_030--Hb_001377_350 Hb_005582_040 Hb_005582_040 Hb_004679_030--Hb_005582_040 Hb_011228_010 Hb_011228_010 Hb_004679_030--Hb_011228_010 Hb_000941_150--Hb_000976_100 Hb_002099_080 Hb_002099_080 Hb_000941_150--Hb_002099_080 Hb_000183_030 Hb_000183_030 Hb_000941_150--Hb_000183_030 Hb_000922_030 Hb_000922_030 Hb_000941_150--Hb_000922_030 Hb_007820_010 Hb_007820_010 Hb_000941_150--Hb_007820_010 Hb_001876_010 Hb_001876_010 Hb_002768_060--Hb_001876_010 Hb_004480_100 Hb_004480_100 Hb_002768_060--Hb_004480_100 Hb_002768_060--Hb_003544_160 Hb_000789_200 Hb_000789_200 Hb_002768_060--Hb_000789_200 Hb_002908_050 Hb_002908_050 Hb_002768_060--Hb_002908_050 Hb_002768_060--Hb_004679_030 Hb_000237_040 Hb_000237_040 Hb_000976_100--Hb_000237_040 Hb_027445_020 Hb_027445_020 Hb_000976_100--Hb_027445_020 Hb_001369_360 Hb_001369_360 Hb_000976_100--Hb_001369_360 Hb_002025_330 Hb_002025_330 Hb_000976_100--Hb_002025_330 Hb_000363_040 Hb_000363_040 Hb_000976_100--Hb_000363_040 Hb_004019_120 Hb_004019_120 Hb_000976_100--Hb_004019_120 Hb_138585_080 Hb_138585_080 Hb_009296_080--Hb_138585_080 Hb_004137_020 Hb_004137_020 Hb_009296_080--Hb_004137_020 Hb_000504_180 Hb_000504_180 Hb_009296_080--Hb_000504_180 Hb_000465_280 Hb_000465_280 Hb_009296_080--Hb_000465_280 Hb_009296_080--Hb_012114_100 Hb_000803_320 Hb_000803_320 Hb_009296_080--Hb_000803_320 Hb_012518_070 Hb_012518_070 Hb_012114_100--Hb_012518_070 Hb_006452_120 Hb_006452_120 Hb_012114_100--Hb_006452_120 Hb_001440_020 Hb_001440_020 Hb_012114_100--Hb_001440_020 Hb_011249_070 Hb_011249_070 Hb_012114_100--Hb_011249_070 Hb_012055_040 Hb_012055_040 Hb_012114_100--Hb_012055_040 Hb_003498_080 Hb_003498_080 Hb_012114_100--Hb_003498_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.35641 14.1479 8.68833 27.8872 13.8315 16.3524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5314 11.2919 18.8863 16.992 30.0858

CAGE analysis