Hb_004137_020

Information

Type -
Description -
Location Contig4137: 7881-11783
Sequence    

Annotation

kegg
ID rcu:RCOM_0138290
description glycogenin, putative (EC:2.4.1.186)
nr
ID XP_012066076.1
description PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2 [Jatropha curcas]
swissprot
ID Q8W4A7
description Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 OS=Arabidopsis thaliana GN=GUX3 PE=2 SV=1
trembl
ID A0A067L3J6
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_25227 PE=3 SV=1
Gene Ontology
ID GO:0005794
description udp-glucuronate:xylan alpha-glucuronosyltransferase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40969: 8784-11820
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004137_020 0.0 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2 [Jatropha curcas]
2 Hb_009296_080 0.0749022786 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
3 Hb_000748_030 0.0917853559 - - ATP binding protein, putative [Ricinus communis]
4 Hb_008748_030 0.093909706 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000853_200 0.0951588526 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
6 Hb_028928_010 0.0967869931 - - hypothetical protein CISIN_1g0030132mg, partial [Citrus sinensis]
7 Hb_002272_030 0.0992216891 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
8 Hb_001329_250 0.1008864646 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
9 Hb_000567_230 0.1023029767 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
10 Hb_000012_310 0.1024452926 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
11 Hb_000291_150 0.1028820515 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
12 Hb_001717_010 0.1030252665 - - F-box and wd40 domain protein, putative [Ricinus communis]
13 Hb_009658_030 0.1045491279 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
14 Hb_003498_080 0.1055933696 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
15 Hb_001723_100 0.1058249771 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
16 Hb_138585_080 0.10708365 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
17 Hb_001828_170 0.1072464021 - - PREDICTED: protein TPLATE [Jatropha curcas]
18 Hb_002042_050 0.1075276825 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
19 Hb_020178_040 0.1075328317 - - conserved hypothetical protein [Ricinus communis]
20 Hb_023344_150 0.1097355376 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]

Gene co-expression network

sample Hb_004137_020 Hb_004137_020 Hb_009296_080 Hb_009296_080 Hb_004137_020--Hb_009296_080 Hb_000748_030 Hb_000748_030 Hb_004137_020--Hb_000748_030 Hb_008748_030 Hb_008748_030 Hb_004137_020--Hb_008748_030 Hb_000853_200 Hb_000853_200 Hb_004137_020--Hb_000853_200 Hb_028928_010 Hb_028928_010 Hb_004137_020--Hb_028928_010 Hb_002272_030 Hb_002272_030 Hb_004137_020--Hb_002272_030 Hb_138585_080 Hb_138585_080 Hb_009296_080--Hb_138585_080 Hb_000504_180 Hb_000504_180 Hb_009296_080--Hb_000504_180 Hb_000465_280 Hb_000465_280 Hb_009296_080--Hb_000465_280 Hb_012114_100 Hb_012114_100 Hb_009296_080--Hb_012114_100 Hb_000803_320 Hb_000803_320 Hb_009296_080--Hb_000803_320 Hb_000748_030--Hb_000853_200 Hb_000477_100 Hb_000477_100 Hb_000748_030--Hb_000477_100 Hb_001454_230 Hb_001454_230 Hb_000748_030--Hb_001454_230 Hb_003305_040 Hb_003305_040 Hb_000748_030--Hb_003305_040 Hb_003529_030 Hb_003529_030 Hb_000748_030--Hb_003529_030 Hb_000227_160 Hb_000227_160 Hb_008748_030--Hb_000227_160 Hb_000012_310 Hb_000012_310 Hb_008748_030--Hb_000012_310 Hb_006452_120 Hb_006452_120 Hb_008748_030--Hb_006452_120 Hb_000574_450 Hb_000574_450 Hb_008748_030--Hb_000574_450 Hb_028487_160 Hb_028487_160 Hb_008748_030--Hb_028487_160 Hb_000778_010 Hb_000778_010 Hb_008748_030--Hb_000778_010 Hb_000853_200--Hb_000477_100 Hb_000505_150 Hb_000505_150 Hb_000853_200--Hb_000505_150 Hb_000853_200--Hb_008748_030 Hb_000853_200--Hb_000012_310 Hb_007416_210 Hb_007416_210 Hb_000853_200--Hb_007416_210 Hb_010672_020 Hb_010672_020 Hb_028928_010--Hb_010672_020 Hb_001817_170 Hb_001817_170 Hb_028928_010--Hb_001817_170 Hb_000567_230 Hb_000567_230 Hb_028928_010--Hb_000567_230 Hb_000705_230 Hb_000705_230 Hb_028928_010--Hb_000705_230 Hb_028928_010--Hb_002272_030 Hb_020178_040 Hb_020178_040 Hb_002272_030--Hb_020178_040 Hb_002042_050 Hb_002042_050 Hb_002272_030--Hb_002042_050 Hb_002272_030--Hb_000567_230 Hb_001723_100 Hb_001723_100 Hb_002272_030--Hb_001723_100 Hb_002830_010 Hb_002830_010 Hb_002272_030--Hb_002830_010 Hb_009288_010 Hb_009288_010 Hb_002272_030--Hb_009288_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.526 19.6167 14.6747 33.3601 8.35586 10.3792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.36693 13.3446 21.726 13.8866 24.4139

CAGE analysis