Hb_002780_020

Information

Type -
Description -
Location Contig2780: 45317-58694
Sequence    

Annotation

kegg
ID rcu:RCOM_0804070
description hypothetical protein
nr
ID XP_012078923.1
description PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 [Jatropha curcas]
swissprot
ID Q8RXE7
description Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2
trembl
ID B9RS84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0804070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29007: 48401-48797 , PASA_asmbl_29008: 48844-49921 , PASA_asmbl_29009: 50173-51275 , PASA_asmbl_29010: 51115-58202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002780_020 0.0 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 [Jatropha curcas]
2 Hb_012395_230 0.0693163917 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
3 Hb_004970_190 0.0736347863 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_000346_060 0.0894979333 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
5 Hb_001123_260 0.0905091215 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
6 Hb_000699_030 0.0912268964 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
7 Hb_007632_030 0.0918647805 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
8 Hb_165928_020 0.0926183602 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
9 Hb_007657_010 0.0927631599 - - ATP binding protein, putative [Ricinus communis]
10 Hb_001014_160 0.0928096235 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
11 Hb_029879_010 0.0940804213 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
12 Hb_004841_010 0.0944269384 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
13 Hb_000205_190 0.0950623032 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
14 Hb_000804_040 0.0951186843 - - protein with unknown function [Ricinus communis]
15 Hb_011930_020 0.0952498221 - - PREDICTED: uncharacterized protein LOC105649787 isoform X1 [Jatropha curcas]
16 Hb_004097_070 0.0955791535 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
17 Hb_000317_050 0.0957114361 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
18 Hb_005489_020 0.096880924 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001322_140 0.0970778981 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
20 Hb_019280_030 0.0974924808 - - -

Gene co-expression network

sample Hb_002780_020 Hb_002780_020 Hb_012395_230 Hb_012395_230 Hb_002780_020--Hb_012395_230 Hb_004970_190 Hb_004970_190 Hb_002780_020--Hb_004970_190 Hb_000346_060 Hb_000346_060 Hb_002780_020--Hb_000346_060 Hb_001123_260 Hb_001123_260 Hb_002780_020--Hb_001123_260 Hb_000699_030 Hb_000699_030 Hb_002780_020--Hb_000699_030 Hb_007632_030 Hb_007632_030 Hb_002780_020--Hb_007632_030 Hb_012395_230--Hb_004970_190 Hb_000053_110 Hb_000053_110 Hb_012395_230--Hb_000053_110 Hb_008642_040 Hb_008642_040 Hb_012395_230--Hb_008642_040 Hb_000883_020 Hb_000883_020 Hb_012395_230--Hb_000883_020 Hb_003513_010 Hb_003513_010 Hb_012395_230--Hb_003513_010 Hb_000205_190 Hb_000205_190 Hb_004970_190--Hb_000205_190 Hb_007007_120 Hb_007007_120 Hb_004970_190--Hb_007007_120 Hb_004970_190--Hb_003513_010 Hb_000869_020 Hb_000869_020 Hb_004970_190--Hb_000869_020 Hb_000753_240 Hb_000753_240 Hb_004970_190--Hb_000753_240 Hb_007657_010 Hb_007657_010 Hb_000346_060--Hb_007657_010 Hb_000343_250 Hb_000343_250 Hb_000346_060--Hb_000343_250 Hb_004003_040 Hb_004003_040 Hb_000346_060--Hb_004003_040 Hb_004097_070 Hb_004097_070 Hb_000346_060--Hb_004097_070 Hb_002732_040 Hb_002732_040 Hb_000346_060--Hb_002732_040 Hb_004963_030 Hb_004963_030 Hb_000346_060--Hb_004963_030 Hb_005779_080 Hb_005779_080 Hb_001123_260--Hb_005779_080 Hb_005489_020 Hb_005489_020 Hb_001123_260--Hb_005489_020 Hb_021443_040 Hb_021443_040 Hb_001123_260--Hb_021443_040 Hb_006816_430 Hb_006816_430 Hb_001123_260--Hb_006816_430 Hb_007943_110 Hb_007943_110 Hb_001123_260--Hb_007943_110 Hb_001123_260--Hb_004097_070 Hb_000708_030 Hb_000708_030 Hb_000699_030--Hb_000708_030 Hb_000327_270 Hb_000327_270 Hb_000699_030--Hb_000327_270 Hb_000699_030--Hb_007007_120 Hb_005116_160 Hb_005116_160 Hb_000699_030--Hb_005116_160 Hb_000699_030--Hb_005489_020 Hb_003680_120 Hb_003680_120 Hb_000699_030--Hb_003680_120 Hb_000365_120 Hb_000365_120 Hb_007632_030--Hb_000365_120 Hb_009421_020 Hb_009421_020 Hb_007632_030--Hb_009421_020 Hb_156973_010 Hb_156973_010 Hb_007632_030--Hb_156973_010 Hb_004841_010 Hb_004841_010 Hb_007632_030--Hb_004841_010 Hb_000120_790 Hb_000120_790 Hb_007632_030--Hb_000120_790 Hb_023386_020 Hb_023386_020 Hb_007632_030--Hb_023386_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.59029 1.75084 2.07365 1.30451 1.57424 2.82075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.25129 2.49338 1.6328 1.2489 3.15221

CAGE analysis