Hb_000189_570

Information

Type -
Description -
Location Contig189: 443495-444316
Sequence    

Annotation

kegg
ID pop:POPTR_0005s05080g
description rubredoxin family protein
nr
ID XP_012089210.1
description PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
swissprot
ID P73068
description Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rub PE=3 SV=1
trembl
ID A0A067JUG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23458 PE=4 SV=1
Gene Ontology
ID GO:0009507
description rubredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18711: 441192-442941 , PASA_asmbl_18712: 442964-443497
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_570 0.0 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
2 Hb_007904_230 0.0769583789 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
3 Hb_004965_110 0.0864762265 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
4 Hb_001900_140 0.086535491 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
5 Hb_000330_090 0.0912832013 - - ornithine carbamoyltransferase, putative [Ricinus communis]
6 Hb_004123_020 0.0914149704 - - amino acid binding protein, putative [Ricinus communis]
7 Hb_004984_030 0.0941426221 - - protein with unknown function [Ricinus communis]
8 Hb_003266_030 0.0951133435 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
9 Hb_044653_040 0.0972707161 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
10 Hb_049575_010 0.0977723504 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
11 Hb_006132_090 0.0978634749 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
12 Hb_001178_010 0.0996222696 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]
13 Hb_053709_050 0.0996434622 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_000364_050 0.0996950121 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
15 Hb_009296_070 0.1032636482 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
16 Hb_006637_030 0.1034997049 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
17 Hb_007192_030 0.1035744139 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
18 Hb_002968_040 0.1048872563 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
19 Hb_062226_060 0.1051098287 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
20 Hb_000080_130 0.1063293528 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]

Gene co-expression network

sample Hb_000189_570 Hb_000189_570 Hb_007904_230 Hb_007904_230 Hb_000189_570--Hb_007904_230 Hb_004965_110 Hb_004965_110 Hb_000189_570--Hb_004965_110 Hb_001900_140 Hb_001900_140 Hb_000189_570--Hb_001900_140 Hb_000330_090 Hb_000330_090 Hb_000189_570--Hb_000330_090 Hb_004123_020 Hb_004123_020 Hb_000189_570--Hb_004123_020 Hb_004984_030 Hb_004984_030 Hb_000189_570--Hb_004984_030 Hb_000364_050 Hb_000364_050 Hb_007904_230--Hb_000364_050 Hb_003266_030 Hb_003266_030 Hb_007904_230--Hb_003266_030 Hb_000811_070 Hb_000811_070 Hb_007904_230--Hb_000811_070 Hb_007192_030 Hb_007192_030 Hb_007904_230--Hb_007192_030 Hb_000080_130 Hb_000080_130 Hb_007904_230--Hb_000080_130 Hb_049575_010 Hb_049575_010 Hb_007904_230--Hb_049575_010 Hb_004965_110--Hb_003266_030 Hb_004965_110--Hb_007904_230 Hb_011671_260 Hb_011671_260 Hb_004965_110--Hb_011671_260 Hb_006132_090 Hb_006132_090 Hb_004965_110--Hb_006132_090 Hb_000926_080 Hb_000926_080 Hb_004965_110--Hb_000926_080 Hb_004965_110--Hb_001900_140 Hb_001587_180 Hb_001587_180 Hb_001900_140--Hb_001587_180 Hb_001900_140--Hb_006132_090 Hb_007558_090 Hb_007558_090 Hb_001900_140--Hb_007558_090 Hb_001900_140--Hb_003266_030 Hb_001900_140--Hb_007904_230 Hb_005946_040 Hb_005946_040 Hb_001900_140--Hb_005946_040 Hb_000330_090--Hb_049575_010 Hb_000174_260 Hb_000174_260 Hb_000330_090--Hb_000174_260 Hb_001269_130 Hb_001269_130 Hb_000330_090--Hb_001269_130 Hb_002693_030 Hb_002693_030 Hb_000330_090--Hb_002693_030 Hb_000330_090--Hb_007904_230 Hb_007199_020 Hb_007199_020 Hb_000330_090--Hb_007199_020 Hb_002045_060 Hb_002045_060 Hb_004123_020--Hb_002045_060 Hb_004123_020--Hb_007904_230 Hb_011609_090 Hb_011609_090 Hb_004123_020--Hb_011609_090 Hb_005276_040 Hb_005276_040 Hb_004123_020--Hb_005276_040 Hb_004123_020--Hb_000364_050 Hb_000832_190 Hb_000832_190 Hb_004984_030--Hb_000832_190 Hb_002028_090 Hb_002028_090 Hb_004984_030--Hb_002028_090 Hb_000926_200 Hb_000926_200 Hb_004984_030--Hb_000926_200 Hb_000946_090 Hb_000946_090 Hb_004984_030--Hb_000946_090 Hb_040819_010 Hb_040819_010 Hb_004984_030--Hb_040819_010 Hb_005460_060 Hb_005460_060 Hb_004984_030--Hb_005460_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.937502 0.976802 2.55598 1.91327 0.326592 0.617548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16825 2.21896 1.34303 1.34735 1.93247

CAGE analysis