Hb_003206_130

Information

Type -
Description -
Location Contig3206: 200402-218594
Sequence    

Annotation

kegg
ID rcu:RCOM_0582330
description hypothetical protein
nr
ID XP_012075039.1
description PREDICTED: protein NRDE2 homolog [Jatropha curcas]
swissprot
ID Q9H7Z3
description Protein NRDE2 homolog OS=Homo sapiens GN=NRDE2 PE=1 SV=3
trembl
ID A0A067KKE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10935 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein nrde2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33886: 200219-200942 , PASA_asmbl_33887: 202197-203323 , PASA_asmbl_33888: 203509-208087 , PASA_asmbl_33889: 208167-216168 , PASA_asmbl_33890: 216200-217404 , PASA_asmbl_33891: 217751-218161
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003206_130 0.0 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
2 Hb_001550_060 0.0541756688 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
3 Hb_003470_080 0.0557626131 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
4 Hb_000441_120 0.0582031919 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_159558_010 0.0584472644 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
6 Hb_006420_040 0.0599292286 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
7 Hb_000614_210 0.0632157443 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
8 Hb_003494_020 0.0653238241 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
9 Hb_012194_030 0.0654254912 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
10 Hb_162275_050 0.0685357253 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
11 Hb_000395_130 0.0689660794 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
12 Hb_000258_160 0.070695225 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012395_140 0.0718322055 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
14 Hb_004182_050 0.0726332118 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
15 Hb_001814_030 0.0727065023 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
16 Hb_007810_110 0.0761203358 - - PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]
17 Hb_000035_290 0.0765372035 - - RNA recognition motif-containing family protein [Populus trichocarpa]
18 Hb_002043_140 0.0768159451 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
19 Hb_000671_070 0.0768928013 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
20 Hb_000412_010 0.0770607039 - - hect ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003206_130 Hb_003206_130 Hb_001550_060 Hb_001550_060 Hb_003206_130--Hb_001550_060 Hb_003470_080 Hb_003470_080 Hb_003206_130--Hb_003470_080 Hb_000441_120 Hb_000441_120 Hb_003206_130--Hb_000441_120 Hb_159558_010 Hb_159558_010 Hb_003206_130--Hb_159558_010 Hb_006420_040 Hb_006420_040 Hb_003206_130--Hb_006420_040 Hb_000614_210 Hb_000614_210 Hb_003206_130--Hb_000614_210 Hb_001550_060--Hb_006420_040 Hb_012395_140 Hb_012395_140 Hb_001550_060--Hb_012395_140 Hb_000025_320 Hb_000025_320 Hb_001550_060--Hb_000025_320 Hb_001195_320 Hb_001195_320 Hb_001550_060--Hb_001195_320 Hb_000395_070 Hb_000395_070 Hb_001550_060--Hb_000395_070 Hb_000003_190 Hb_000003_190 Hb_003470_080--Hb_000003_190 Hb_002253_080 Hb_002253_080 Hb_003470_080--Hb_002253_080 Hb_001080_230 Hb_001080_230 Hb_003470_080--Hb_001080_230 Hb_000069_470 Hb_000069_470 Hb_003470_080--Hb_000069_470 Hb_000170_150 Hb_000170_150 Hb_003470_080--Hb_000170_150 Hb_000441_120--Hb_006420_040 Hb_000165_040 Hb_000165_040 Hb_000441_120--Hb_000165_040 Hb_000207_180 Hb_000207_180 Hb_000441_120--Hb_000207_180 Hb_000395_130 Hb_000395_130 Hb_000441_120--Hb_000395_130 Hb_009270_020 Hb_009270_020 Hb_000441_120--Hb_009270_020 Hb_159558_010--Hb_000614_210 Hb_005542_140 Hb_005542_140 Hb_159558_010--Hb_005542_140 Hb_001814_030 Hb_001814_030 Hb_159558_010--Hb_001814_030 Hb_000174_060 Hb_000174_060 Hb_159558_010--Hb_000174_060 Hb_009615_170 Hb_009615_170 Hb_159558_010--Hb_009615_170 Hb_000671_070 Hb_000671_070 Hb_006420_040--Hb_000671_070 Hb_006420_040--Hb_000025_320 Hb_009503_030 Hb_009503_030 Hb_006420_040--Hb_009503_030 Hb_002205_250 Hb_002205_250 Hb_000614_210--Hb_002205_250 Hb_003835_070 Hb_003835_070 Hb_000614_210--Hb_003835_070 Hb_000614_210--Hb_001814_030 Hb_162275_050 Hb_162275_050 Hb_000614_210--Hb_162275_050 Hb_105105_010 Hb_105105_010 Hb_000614_210--Hb_105105_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.61232 7.90503 3.62431 4.41662 6.53026 5.81721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.95827 5.11663 4.88069 6.10335 5.994

CAGE analysis