Hb_120803_010

Information

Type -
Description -
Location Contig120803: 2979-3677
Sequence    

Annotation

kegg
ID mdm:103442955
description protein kinase and PP2C-like domain-containing protein
nr
ID XP_008379958.1
description PREDICTED: protein kinase and PP2C-like domain-containing protein [Malus domestica]
swissprot
ID Q940A2
description Protein kinase and PP2C-like domain-containing protein OS=Arabidopsis thaliana GN=At2g40860/At2g40870 PE=2 SV=1
trembl
ID M5VWJ7
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003161mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description protein kinase and pp2c-like domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_120803_010 0.0 - - PREDICTED: protein kinase and PP2C-like domain-containing protein [Malus domestica]
2 Hb_000236_470 0.0617636742 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
3 Hb_000556_170 0.0766464257 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
4 Hb_001047_200 0.0785887168 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
5 Hb_001191_120 0.0811558029 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
6 Hb_000640_310 0.0841200648 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
7 Hb_001277_020 0.0849447481 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
8 Hb_000823_030 0.0850953298 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
9 Hb_002174_030 0.0859576334 - - transcription elongation factor s-II, putative [Ricinus communis]
10 Hb_000025_320 0.0886628275 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
11 Hb_000099_040 0.0917829056 - - unnamed protein product [Coffea canephora]
12 Hb_008147_040 0.0924916392 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
13 Hb_002217_430 0.0930163122 - - PREDICTED: flowering time control protein FCA isoform X4 [Jatropha curcas]
14 Hb_007426_060 0.0937524575 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
15 Hb_002784_010 0.094380347 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
16 Hb_001430_080 0.0955919481 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
17 Hb_012194_030 0.0957223783 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
18 Hb_001799_050 0.0964880391 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
19 Hb_003943_020 0.0967479304 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
20 Hb_000010_360 0.0967620411 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]

Gene co-expression network

sample Hb_120803_010 Hb_120803_010 Hb_000236_470 Hb_000236_470 Hb_120803_010--Hb_000236_470 Hb_000556_170 Hb_000556_170 Hb_120803_010--Hb_000556_170 Hb_001047_200 Hb_001047_200 Hb_120803_010--Hb_001047_200 Hb_001191_120 Hb_001191_120 Hb_120803_010--Hb_001191_120 Hb_000640_310 Hb_000640_310 Hb_120803_010--Hb_000640_310 Hb_001277_020 Hb_001277_020 Hb_120803_010--Hb_001277_020 Hb_000236_470--Hb_001277_020 Hb_000236_470--Hb_000640_310 Hb_002701_150 Hb_002701_150 Hb_000236_470--Hb_002701_150 Hb_000236_470--Hb_001047_200 Hb_000236_470--Hb_000556_170 Hb_000556_170--Hb_000640_310 Hb_003633_070 Hb_003633_070 Hb_000556_170--Hb_003633_070 Hb_001799_050 Hb_001799_050 Hb_000556_170--Hb_001799_050 Hb_140049_040 Hb_140049_040 Hb_000556_170--Hb_140049_040 Hb_004480_040 Hb_004480_040 Hb_000556_170--Hb_004480_040 Hb_000577_030 Hb_000577_030 Hb_001047_200--Hb_000577_030 Hb_000823_030 Hb_000823_030 Hb_001047_200--Hb_000823_030 Hb_000184_150 Hb_000184_150 Hb_001047_200--Hb_000184_150 Hb_001021_200 Hb_001021_200 Hb_001047_200--Hb_001021_200 Hb_005542_050 Hb_005542_050 Hb_001047_200--Hb_005542_050 Hb_000671_070 Hb_000671_070 Hb_001191_120--Hb_000671_070 Hb_000025_320 Hb_000025_320 Hb_001191_120--Hb_000025_320 Hb_002350_010 Hb_002350_010 Hb_001191_120--Hb_002350_010 Hb_000025_710 Hb_000025_710 Hb_001191_120--Hb_000025_710 Hb_000243_210 Hb_000243_210 Hb_001191_120--Hb_000243_210 Hb_000914_120 Hb_000914_120 Hb_001191_120--Hb_000914_120 Hb_000640_310--Hb_001799_050 Hb_000191_130 Hb_000191_130 Hb_000640_310--Hb_000191_130 Hb_000160_350 Hb_000160_350 Hb_000640_310--Hb_000160_350 Hb_023344_010 Hb_023344_010 Hb_000640_310--Hb_023344_010 Hb_001430_080 Hb_001430_080 Hb_001277_020--Hb_001430_080 Hb_001277_020--Hb_140049_040 Hb_008147_040 Hb_008147_040 Hb_001277_020--Hb_008147_040 Hb_000099_040 Hb_000099_040 Hb_001277_020--Hb_000099_040 Hb_000011_100 Hb_000011_100 Hb_001277_020--Hb_000011_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.62053 8.54135 5.68016 1.80929 6.19869 4.97214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25115 2.88467 3.44636 6.87202 4.92402

CAGE analysis