Hb_005365_020

Information

Type -
Description -
Location Contig5365: 32018-35683
Sequence    

Annotation

kegg
ID rcu:RCOM_1627130
description ribonuclease, putative (EC:3.1.13.4)
nr
ID KDP45240.1
description hypothetical protein JCGZ_15105 [Jatropha curcas]
swissprot
ID Q8W4C3
description Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana GN=At3g25430 PE=2 SV=1
trembl
ID A0A067LKN4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15105 PE=4 SV=1
Gene Ontology
ID GO:0005634
description poly -specific ribonuclease parn-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47578: 32244-33645 , PASA_asmbl_47579: 33648-34274 , PASA_asmbl_47581: 34090-34640
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005365_020 0.0 - - hypothetical protein JCGZ_15105 [Jatropha curcas]
2 Hb_000982_050 0.079965568 - - PREDICTED: uncharacterized protein LOC105643124 isoform X1 [Jatropha curcas]
3 Hb_144166_010 0.0827234457 - - PREDICTED: importin-13 [Jatropha curcas]
4 Hb_001104_160 0.0853016904 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
5 Hb_010068_040 0.0869451755 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
6 Hb_002154_120 0.0874046242 - - PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
7 Hb_001821_160 0.0941077688 - - serine/arginine rich splicing factor, putative [Ricinus communis]
8 Hb_002835_230 0.0959042564 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
9 Hb_004785_100 0.0961745553 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000003_290 0.0976688864 - - hypothetical protein JCGZ_24486 [Jatropha curcas]
11 Hb_000139_260 0.097784741 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
12 Hb_003018_130 0.0980454267 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
13 Hb_000085_150 0.0984807281 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
14 Hb_120410_010 0.0989397122 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
15 Hb_001586_040 0.0989680487 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
16 Hb_033720_010 0.0993374312 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
17 Hb_033153_070 0.1000458274 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
18 Hb_002374_370 0.1001779445 - - protein with unknown function [Ricinus communis]
19 Hb_002518_280 0.1002667131 - - phosphate transporter [Manihot esculenta]
20 Hb_000732_120 0.100429637 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005365_020 Hb_005365_020 Hb_000982_050 Hb_000982_050 Hb_005365_020--Hb_000982_050 Hb_144166_010 Hb_144166_010 Hb_005365_020--Hb_144166_010 Hb_001104_160 Hb_001104_160 Hb_005365_020--Hb_001104_160 Hb_010068_040 Hb_010068_040 Hb_005365_020--Hb_010068_040 Hb_002154_120 Hb_002154_120 Hb_005365_020--Hb_002154_120 Hb_001821_160 Hb_001821_160 Hb_005365_020--Hb_001821_160 Hb_000982_050--Hb_144166_010 Hb_000215_220 Hb_000215_220 Hb_000982_050--Hb_000215_220 Hb_000085_150 Hb_000085_150 Hb_000982_050--Hb_000085_150 Hb_007426_150 Hb_007426_150 Hb_000982_050--Hb_007426_150 Hb_000982_050--Hb_001104_160 Hb_144166_010--Hb_000085_150 Hb_002078_110 Hb_002078_110 Hb_144166_010--Hb_002078_110 Hb_003124_220 Hb_003124_220 Hb_144166_010--Hb_003124_220 Hb_131646_010 Hb_131646_010 Hb_144166_010--Hb_131646_010 Hb_004195_200 Hb_004195_200 Hb_001104_160--Hb_004195_200 Hb_000289_040 Hb_000289_040 Hb_001104_160--Hb_000289_040 Hb_002835_230 Hb_002835_230 Hb_001104_160--Hb_002835_230 Hb_014361_070 Hb_014361_070 Hb_001104_160--Hb_014361_070 Hb_000402_080 Hb_000402_080 Hb_001104_160--Hb_000402_080 Hb_000696_230 Hb_000696_230 Hb_001104_160--Hb_000696_230 Hb_000174_110 Hb_000174_110 Hb_010068_040--Hb_000174_110 Hb_033153_070 Hb_033153_070 Hb_010068_040--Hb_033153_070 Hb_000334_270 Hb_000334_270 Hb_010068_040--Hb_000334_270 Hb_002175_030 Hb_002175_030 Hb_010068_040--Hb_002175_030 Hb_003029_030 Hb_003029_030 Hb_010068_040--Hb_003029_030 Hb_001433_070 Hb_001433_070 Hb_010068_040--Hb_001433_070 Hb_012022_160 Hb_012022_160 Hb_002154_120--Hb_012022_160 Hb_002154_120--Hb_010068_040 Hb_000236_240 Hb_000236_240 Hb_002154_120--Hb_000236_240 Hb_006120_070 Hb_006120_070 Hb_002154_120--Hb_006120_070 Hb_000690_130 Hb_000690_130 Hb_002154_120--Hb_000690_130 Hb_120410_010 Hb_120410_010 Hb_002154_120--Hb_120410_010 Hb_004785_100 Hb_004785_100 Hb_001821_160--Hb_004785_100 Hb_000331_110 Hb_000331_110 Hb_001821_160--Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_001821_160--Hb_079526_030 Hb_012753_170 Hb_012753_170 Hb_001821_160--Hb_012753_170 Hb_005588_090 Hb_005588_090 Hb_001821_160--Hb_005588_090 Hb_022256_060 Hb_022256_060 Hb_001821_160--Hb_022256_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.04999 7.79023 7.49418 6.19967 14.3 8.95748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.14779 9.25417 4.73492 4.50216 7.23144

CAGE analysis