Hb_000215_220

Information

Type -
Description -
Location Contig215: 174129-180447
Sequence    

Annotation

kegg
ID pop:POPTR_0006s15780g
description POPTRDRAFT_819280; hypothetical protein
nr
ID XP_012076838.1
description PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
swissprot
ID Q8VZU9
description Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1
trembl
ID A0A067KC43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07347 PE=4 SV=1
Gene Ontology
ID GO:0006457
description derlin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22196: 174015-180253 , PASA_asmbl_22197: 174611-174920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_220 0.0 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
2 Hb_001109_060 0.0916229762 - - amino acid transporter, putative [Ricinus communis]
3 Hb_000982_050 0.0920124868 - - PREDICTED: uncharacterized protein LOC105643124 isoform X1 [Jatropha curcas]
4 Hb_089140_050 0.0967879398 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
5 Hb_004631_150 0.0975795108 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
6 Hb_011344_020 0.0989498094 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
7 Hb_000139_260 0.0990398617 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
8 Hb_000429_220 0.1004958845 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
9 Hb_003376_270 0.1030350866 - - hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
10 Hb_007919_100 0.103243239 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
11 Hb_000958_070 0.1039297598 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]
12 Hb_017295_010 0.1041309432 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
13 Hb_000855_020 0.1057525292 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
14 Hb_007943_110 0.1057930307 - - PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]
15 Hb_001277_300 0.1069055268 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
16 Hb_004032_410 0.1075773848 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
17 Hb_005365_020 0.1076829928 - - hypothetical protein JCGZ_15105 [Jatropha curcas]
18 Hb_001619_150 0.1078570781 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X1 [Jatropha curcas]
19 Hb_000664_110 0.1081478287 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
20 Hb_000086_440 0.1082126906 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000215_220 Hb_000215_220 Hb_001109_060 Hb_001109_060 Hb_000215_220--Hb_001109_060 Hb_000982_050 Hb_000982_050 Hb_000215_220--Hb_000982_050 Hb_089140_050 Hb_089140_050 Hb_000215_220--Hb_089140_050 Hb_004631_150 Hb_004631_150 Hb_000215_220--Hb_004631_150 Hb_011344_020 Hb_011344_020 Hb_000215_220--Hb_011344_020 Hb_000139_260 Hb_000139_260 Hb_000215_220--Hb_000139_260 Hb_000086_440 Hb_000086_440 Hb_001109_060--Hb_000086_440 Hb_005227_010 Hb_005227_010 Hb_001109_060--Hb_005227_010 Hb_162275_040 Hb_162275_040 Hb_001109_060--Hb_162275_040 Hb_000664_110 Hb_000664_110 Hb_001109_060--Hb_000664_110 Hb_017295_010 Hb_017295_010 Hb_001109_060--Hb_017295_010 Hb_005946_210 Hb_005946_210 Hb_001109_060--Hb_005946_210 Hb_005365_020 Hb_005365_020 Hb_000982_050--Hb_005365_020 Hb_144166_010 Hb_144166_010 Hb_000982_050--Hb_144166_010 Hb_000085_150 Hb_000085_150 Hb_000982_050--Hb_000085_150 Hb_007426_150 Hb_007426_150 Hb_000982_050--Hb_007426_150 Hb_001104_160 Hb_001104_160 Hb_000982_050--Hb_001104_160 Hb_004453_110 Hb_004453_110 Hb_089140_050--Hb_004453_110 Hb_000671_070 Hb_000671_070 Hb_089140_050--Hb_000671_070 Hb_000429_220 Hb_000429_220 Hb_089140_050--Hb_000429_220 Hb_000261_030 Hb_000261_030 Hb_089140_050--Hb_000261_030 Hb_089140_050--Hb_011344_020 Hb_000035_410 Hb_000035_410 Hb_089140_050--Hb_000035_410 Hb_000958_070 Hb_000958_070 Hb_004631_150--Hb_000958_070 Hb_003747_120 Hb_003747_120 Hb_004631_150--Hb_003747_120 Hb_000836_290 Hb_000836_290 Hb_004631_150--Hb_000836_290 Hb_002014_040 Hb_002014_040 Hb_004631_150--Hb_002014_040 Hb_000362_170 Hb_000362_170 Hb_004631_150--Hb_000362_170 Hb_001244_150 Hb_001244_150 Hb_004631_150--Hb_001244_150 Hb_011344_020--Hb_000958_070 Hb_000343_110 Hb_000343_110 Hb_011344_020--Hb_000343_110 Hb_003884_030 Hb_003884_030 Hb_011344_020--Hb_003884_030 Hb_000376_060 Hb_000376_060 Hb_011344_020--Hb_000376_060 Hb_011344_020--Hb_000429_220 Hb_000006_010 Hb_000006_010 Hb_000139_260--Hb_000006_010 Hb_000139_260--Hb_002014_040 Hb_001005_030 Hb_001005_030 Hb_000139_260--Hb_001005_030 Hb_004912_030 Hb_004912_030 Hb_000139_260--Hb_004912_030 Hb_139002_010 Hb_139002_010 Hb_000139_260--Hb_139002_010 Hb_010272_010 Hb_010272_010 Hb_000139_260--Hb_010272_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0474 28.0297 21.2527 33.1133 48.2654 31.4542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0402 18.6898 16.693 12.8747 36.0092

CAGE analysis