Hb_000071_030

Information

Type -
Description -
Location Contig71: 20165-23230
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24570g
description POPTRDRAFT_815354; ankyrin repeat family protein
nr
ID XP_012065023.1
description PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
swissprot
ID Q94B55
description Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1
trembl
ID A0A067L722
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05693 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase xbat31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55176: 20185-23373
cDNA
(Sanger)
(ID:Location)		 029_P03.ab1: 20186-21531 , 034_C15.ab1: 20189-21497

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000071_030 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
2 Hb_006831_110 0.0509539364 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
3 Hb_000680_090 0.0725725816 - - Protein SEY1, putative [Ricinus communis]
4 Hb_002042_140 0.0726079119 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
5 Hb_005321_020 0.0733307188 - - splicing factor-related family protein [Populus trichocarpa]
6 Hb_000983_150 0.0734807543 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
7 Hb_000366_120 0.0758920917 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
8 Hb_002131_020 0.0777372905 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
9 Hb_000922_370 0.0786315717 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
10 Hb_000915_020 0.0787872925 - - unnamed protein product [Vitis vinifera]
11 Hb_000283_070 0.0794460895 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
12 Hb_007576_110 0.0805027536 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
13 Hb_000418_140 0.0806623523 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
14 Hb_100215_010 0.0820647544 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
15 Hb_123352_020 0.0837234732 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
16 Hb_001454_280 0.0843915665 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
17 Hb_003680_150 0.0847975056 - - srpk, putative [Ricinus communis]
18 Hb_002111_070 0.0849594775 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
19 Hb_003531_060 0.0851238581 - - unnamed protein product [Coffea canephora]
20 Hb_002078_020 0.0851863952 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]

Gene co-expression network

sample Hb_000071_030 Hb_000071_030 Hb_006831_110 Hb_006831_110 Hb_000071_030--Hb_006831_110 Hb_000680_090 Hb_000680_090 Hb_000071_030--Hb_000680_090 Hb_002042_140 Hb_002042_140 Hb_000071_030--Hb_002042_140 Hb_005321_020 Hb_005321_020 Hb_000071_030--Hb_005321_020 Hb_000983_150 Hb_000983_150 Hb_000071_030--Hb_000983_150 Hb_000366_120 Hb_000366_120 Hb_000071_030--Hb_000366_120 Hb_006831_110--Hb_002042_140 Hb_006831_110--Hb_005321_020 Hb_000283_070 Hb_000283_070 Hb_006831_110--Hb_000283_070 Hb_009620_050 Hb_009620_050 Hb_006831_110--Hb_009620_050 Hb_000107_500 Hb_000107_500 Hb_006831_110--Hb_000107_500 Hb_000390_320 Hb_000390_320 Hb_000680_090--Hb_000390_320 Hb_000878_180 Hb_000878_180 Hb_000680_090--Hb_000878_180 Hb_000084_250 Hb_000084_250 Hb_000680_090--Hb_000084_250 Hb_000162_280 Hb_000162_280 Hb_000680_090--Hb_000162_280 Hb_002615_090 Hb_002615_090 Hb_000680_090--Hb_002615_090 Hb_003640_040 Hb_003640_040 Hb_000680_090--Hb_003640_040 Hb_000002_040 Hb_000002_040 Hb_002042_140--Hb_000002_040 Hb_004128_050 Hb_004128_050 Hb_002042_140--Hb_004128_050 Hb_010695_020 Hb_010695_020 Hb_002042_140--Hb_010695_020 Hb_000743_040 Hb_000743_040 Hb_002042_140--Hb_000743_040 Hb_007558_120 Hb_007558_120 Hb_002042_140--Hb_007558_120 Hb_000563_640 Hb_000563_640 Hb_005321_020--Hb_000563_640 Hb_000645_120 Hb_000645_120 Hb_005321_020--Hb_000645_120 Hb_003531_060 Hb_003531_060 Hb_005321_020--Hb_003531_060 Hb_005321_020--Hb_000283_070 Hb_005321_020--Hb_009620_050 Hb_007904_160 Hb_007904_160 Hb_000983_150--Hb_007904_160 Hb_000367_010 Hb_000367_010 Hb_000983_150--Hb_000367_010 Hb_100215_010 Hb_100215_010 Hb_000983_150--Hb_100215_010 Hb_023480_010 Hb_023480_010 Hb_000983_150--Hb_023480_010 Hb_002131_020 Hb_002131_020 Hb_000983_150--Hb_002131_020 Hb_000008_290 Hb_000008_290 Hb_000983_150--Hb_000008_290 Hb_007576_110 Hb_007576_110 Hb_000366_120--Hb_007576_110 Hb_021409_040 Hb_021409_040 Hb_000366_120--Hb_021409_040 Hb_004195_200 Hb_004195_200 Hb_000366_120--Hb_004195_200 Hb_014497_050 Hb_014497_050 Hb_000366_120--Hb_014497_050 Hb_001409_020 Hb_001409_020 Hb_000366_120--Hb_001409_020 Hb_000789_310 Hb_000789_310 Hb_000366_120--Hb_000789_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.1808 56.6812 32.0307 41.0891 58.3199 63.6021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.7293 21.017 48.9816 47.7167 28.3837

CAGE analysis