Hb_000482_190

Information

Type -
Description -
Location Contig482: 295555-304128
Sequence    

Annotation

kegg
ID rcu:RCOM_0797570
description map3k delta-1 protein kinase, putative (EC:2.7.11.25)
nr
ID XP_012077291.1
description PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
swissprot
ID Q05609
description Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1
trembl
ID A0A067KD95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07673 PE=3 SV=1
Gene Ontology
ID GO:0044464
description serine threonine-protein kinase edr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44793: 295668-299817 , PASA_asmbl_44794: 299910-304078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_190 0.0 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
2 Hb_001712_060 0.0639703507 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Jatropha curcas]
3 Hb_001789_110 0.0681515888 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_000441_090 0.0716041363 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
5 Hb_003517_040 0.0809143286 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
6 Hb_001936_090 0.082767277 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
7 Hb_000258_070 0.0829395667 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
8 Hb_000749_010 0.0834935045 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
9 Hb_000720_050 0.0839782868 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
10 Hb_007763_070 0.0846249058 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
11 Hb_122968_010 0.0856506123 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
12 Hb_000363_310 0.0858314688 - - DNA topoisomerase type I, putative [Ricinus communis]
13 Hb_006775_130 0.086966501 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
14 Hb_001089_030 0.0872321948 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
15 Hb_188281_040 0.0888220004 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
16 Hb_017469_110 0.088868112 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
17 Hb_000347_430 0.0890828703 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
18 Hb_000375_390 0.0890906341 - - poly-A binding protein, putative [Ricinus communis]
19 Hb_011174_020 0.0908506339 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
20 Hb_002758_010 0.091016464 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]

Gene co-expression network

sample Hb_000482_190 Hb_000482_190 Hb_001712_060 Hb_001712_060 Hb_000482_190--Hb_001712_060 Hb_001789_110 Hb_001789_110 Hb_000482_190--Hb_001789_110 Hb_000441_090 Hb_000441_090 Hb_000482_190--Hb_000441_090 Hb_003517_040 Hb_003517_040 Hb_000482_190--Hb_003517_040 Hb_001936_090 Hb_001936_090 Hb_000482_190--Hb_001936_090 Hb_000258_070 Hb_000258_070 Hb_000482_190--Hb_000258_070 Hb_006775_130 Hb_006775_130 Hb_001712_060--Hb_006775_130 Hb_011249_070 Hb_011249_070 Hb_001712_060--Hb_011249_070 Hb_007763_070 Hb_007763_070 Hb_001712_060--Hb_007763_070 Hb_002046_160 Hb_002046_160 Hb_001712_060--Hb_002046_160 Hb_000300_270 Hb_000300_270 Hb_001712_060--Hb_000300_270 Hb_027073_020 Hb_027073_020 Hb_001789_110--Hb_027073_020 Hb_001789_110--Hb_003517_040 Hb_007413_010 Hb_007413_010 Hb_001789_110--Hb_007413_010 Hb_122968_010 Hb_122968_010 Hb_001789_110--Hb_122968_010 Hb_188281_040 Hb_188281_040 Hb_001789_110--Hb_188281_040 Hb_006913_020 Hb_006913_020 Hb_001789_110--Hb_006913_020 Hb_000441_090--Hb_000258_070 Hb_000441_090--Hb_003517_040 Hb_000317_100 Hb_000317_100 Hb_000441_090--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_000441_090--Hb_005215_010 Hb_002027_080 Hb_002027_080 Hb_000441_090--Hb_002027_080 Hb_003040_050 Hb_003040_050 Hb_000441_090--Hb_003040_050 Hb_000976_140 Hb_000976_140 Hb_003517_040--Hb_000976_140 Hb_000138_100 Hb_000138_100 Hb_003517_040--Hb_000138_100 Hb_003734_010 Hb_003734_010 Hb_003517_040--Hb_003734_010 Hb_002263_020 Hb_002263_020 Hb_003517_040--Hb_002263_020 Hb_029584_070 Hb_029584_070 Hb_001936_090--Hb_029584_070 Hb_000720_050 Hb_000720_050 Hb_001936_090--Hb_000720_050 Hb_002758_010 Hb_002758_010 Hb_001936_090--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_001936_090--Hb_000130_320 Hb_001936_090--Hb_188281_040 Hb_001347_060 Hb_001347_060 Hb_001936_090--Hb_001347_060 Hb_015807_050 Hb_015807_050 Hb_000258_070--Hb_015807_050 Hb_002849_130 Hb_002849_130 Hb_000258_070--Hb_002849_130 Hb_000340_530 Hb_000340_530 Hb_000258_070--Hb_000340_530 Hb_000313_220 Hb_000313_220 Hb_000258_070--Hb_000313_220 Hb_000347_430 Hb_000347_430 Hb_000258_070--Hb_000347_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.5562 7.94795 5.97848 7.6114 6.9713 6.77561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.34604 8.68969 4.47367 6.58232 12.5865

CAGE analysis