Hb_000377_090

Information

Type rubber biosynthesis
Description Gene Name: Acetyl-CoA acetyltransferase
Location Contig377: 152448-163126
Sequence    

Annotation

kegg
ID rcu:RCOM_0860740
description acetyl-CoA acetyltransferase, mitochondrial, putative (EC:2.3.1.9)
nr
ID AFJ74323.1
description acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
swissprot
ID Q9FIK7
description Probable acetyl-CoA acetyltransferase, cytosolic 2 OS=Arabidopsis thaliana GN=At5g47720 PE=2 SV=1
trembl
ID Q944G3
description Acetyl Co-A acetyltransferase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0003985
description acetyl- cytosolic 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38404: 152700-152885 , PASA_asmbl_38405: 152946-161277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000377_090 0.0 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
2 Hb_003376_400 0.0858271483 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
3 Hb_004994_220 0.0866650095 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
4 Hb_006831_040 0.0942959655 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
5 Hb_010174_110 0.095397526 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
6 Hb_002400_410 0.0986294014 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
7 Hb_017358_040 0.1012111865 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
8 Hb_001761_130 0.1016699777 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
9 Hb_000181_320 0.1020818416 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
10 Hb_004218_030 0.1047689706 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001266_100 0.104917705 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
12 Hb_002740_110 0.105111178 - - PREDICTED: phytochrome A [Jatropha curcas]
13 Hb_000002_010 0.1051952777 - - PREDICTED: uncharacterized protein LOC105641567 [Jatropha curcas]
14 Hb_000106_120 0.106896288 - - hypothetical protein glysoja_007050 [Glycine soja]
15 Hb_004032_380 0.1076237747 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
16 Hb_003294_070 0.1081545701 - - hypothetical protein RCOM_1714550 [Ricinus communis]
17 Hb_009079_030 0.1087897839 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
18 Hb_000343_030 0.109311766 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
19 Hb_001114_140 0.1105826463 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
20 Hb_004143_130 0.1111997632 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]

Gene co-expression network

sample Hb_000377_090 Hb_000377_090 Hb_003376_400 Hb_003376_400 Hb_000377_090--Hb_003376_400 Hb_004994_220 Hb_004994_220 Hb_000377_090--Hb_004994_220 Hb_006831_040 Hb_006831_040 Hb_000377_090--Hb_006831_040 Hb_010174_110 Hb_010174_110 Hb_000377_090--Hb_010174_110 Hb_002400_410 Hb_002400_410 Hb_000377_090--Hb_002400_410 Hb_017358_040 Hb_017358_040 Hb_000377_090--Hb_017358_040 Hb_003226_180 Hb_003226_180 Hb_003376_400--Hb_003226_180 Hb_000976_300 Hb_000976_300 Hb_003376_400--Hb_000976_300 Hb_166222_010 Hb_166222_010 Hb_003376_400--Hb_166222_010 Hb_004143_130 Hb_004143_130 Hb_003376_400--Hb_004143_130 Hb_001449_040 Hb_001449_040 Hb_003376_400--Hb_001449_040 Hb_002740_110 Hb_002740_110 Hb_004994_220--Hb_002740_110 Hb_001341_170 Hb_001341_170 Hb_004994_220--Hb_001341_170 Hb_004994_220--Hb_010174_110 Hb_000028_280 Hb_000028_280 Hb_004994_220--Hb_000028_280 Hb_000890_210 Hb_000890_210 Hb_004994_220--Hb_000890_210 Hb_000260_270 Hb_000260_270 Hb_004994_220--Hb_000260_270 Hb_001761_130 Hb_001761_130 Hb_006831_040--Hb_001761_130 Hb_172632_110 Hb_172632_110 Hb_006831_040--Hb_172632_110 Hb_006831_040--Hb_010174_110 Hb_006831_040--Hb_002740_110 Hb_006831_040--Hb_004994_220 Hb_004117_310 Hb_004117_310 Hb_006831_040--Hb_004117_310 Hb_010174_110--Hb_002740_110 Hb_003253_040 Hb_003253_040 Hb_010174_110--Hb_003253_040 Hb_000002_010 Hb_000002_010 Hb_010174_110--Hb_000002_010 Hb_000107_490 Hb_000107_490 Hb_010174_110--Hb_000107_490 Hb_010174_110--Hb_004143_130 Hb_003294_070 Hb_003294_070 Hb_002400_410--Hb_003294_070 Hb_007416_120 Hb_007416_120 Hb_002400_410--Hb_007416_120 Hb_002471_290 Hb_002471_290 Hb_002400_410--Hb_002471_290 Hb_119530_010 Hb_119530_010 Hb_002400_410--Hb_119530_010 Hb_009079_030 Hb_009079_030 Hb_002400_410--Hb_009079_030 Hb_000181_400 Hb_000181_400 Hb_002400_410--Hb_000181_400 Hb_000069_120 Hb_000069_120 Hb_017358_040--Hb_000069_120 Hb_017358_040--Hb_001761_130 Hb_071130_010 Hb_071130_010 Hb_017358_040--Hb_071130_010 Hb_000230_260 Hb_000230_260 Hb_017358_040--Hb_000230_260 Hb_000723_220 Hb_000723_220 Hb_017358_040--Hb_000723_220 Hb_003060_060 Hb_003060_060 Hb_017358_040--Hb_003060_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.4304 21.9511 5.17459 13.783 18.3662 22.6944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7486 12.4012 18.742 35.9475 18.7881

CAGE analysis