Hb_003777_110

Information

Type transcription factor
Description TF Family: TUB
Location Contig3777: 176988-181495
Sequence    

Annotation

kegg
ID rcu:RCOM_0959040
description phosphoric diester hydrolase, putative
nr
ID XP_012080754.1
description PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]
swissprot
ID Q75HX5
description Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1
trembl
ID A0A067K3J2
description Tubby-like F-box protein OS=Jatropha curcas GN=JCGZ_15200 PE=3 SV=1
Gene Ontology
ID GO:0016787
description tubby-like f-box protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38434: 177020-181504 , PASA_asmbl_38435: 179084-179589 , PASA_asmbl_38436: 177123-177311
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_110 0.0 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]
2 Hb_001245_050 0.0669679979 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
3 Hb_000375_290 0.0953236489 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_001009_120 0.0989106998 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
5 Hb_011631_010 0.1018257721 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
6 Hb_006452_180 0.1027724285 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
7 Hb_010287_020 0.1032528362 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
8 Hb_000638_280 0.1036949388 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
9 Hb_001558_060 0.1037325162 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
10 Hb_000086_430 0.1041533057 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
11 Hb_000045_260 0.1045289642 - - protein with unknown function [Ricinus communis]
12 Hb_002107_060 0.1054132032 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
13 Hb_004236_030 0.1067316826 - - unknown [Lotus japonicus]
14 Hb_000866_450 0.1084374158 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_000048_080 0.1098399549 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
16 Hb_033152_090 0.1104606228 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
17 Hb_008695_090 0.111576711 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
18 Hb_004319_050 0.1122409508 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
19 Hb_004659_010 0.1130864645 - - Guanine nucleotide-binding subunit beta-2 [Gossypium arboreum]
20 Hb_004526_010 0.1133741957 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_003777_110 Hb_003777_110 Hb_001245_050 Hb_001245_050 Hb_003777_110--Hb_001245_050 Hb_000375_290 Hb_000375_290 Hb_003777_110--Hb_000375_290 Hb_001009_120 Hb_001009_120 Hb_003777_110--Hb_001009_120 Hb_011631_010 Hb_011631_010 Hb_003777_110--Hb_011631_010 Hb_006452_180 Hb_006452_180 Hb_003777_110--Hb_006452_180 Hb_010287_020 Hb_010287_020 Hb_003777_110--Hb_010287_020 Hb_001245_050--Hb_006452_180 Hb_000866_450 Hb_000866_450 Hb_001245_050--Hb_000866_450 Hb_000115_340 Hb_000115_340 Hb_001245_050--Hb_000115_340 Hb_001245_050--Hb_000375_290 Hb_000120_030 Hb_000120_030 Hb_001245_050--Hb_000120_030 Hb_001225_030 Hb_001225_030 Hb_000375_290--Hb_001225_030 Hb_004870_050 Hb_004870_050 Hb_000375_290--Hb_004870_050 Hb_000048_080 Hb_000048_080 Hb_000375_290--Hb_000048_080 Hb_001558_060 Hb_001558_060 Hb_000375_290--Hb_001558_060 Hb_000579_190 Hb_000579_190 Hb_000375_290--Hb_000579_190 Hb_023226_070 Hb_023226_070 Hb_000375_290--Hb_023226_070 Hb_033152_090 Hb_033152_090 Hb_001009_120--Hb_033152_090 Hb_000640_190 Hb_000640_190 Hb_001009_120--Hb_000640_190 Hb_000956_040 Hb_000956_040 Hb_001009_120--Hb_000956_040 Hb_001009_120--Hb_006452_180 Hb_004319_050 Hb_004319_050 Hb_001009_120--Hb_004319_050 Hb_009178_010 Hb_009178_010 Hb_001009_120--Hb_009178_010 Hb_000045_260 Hb_000045_260 Hb_011631_010--Hb_000045_260 Hb_002897_050 Hb_002897_050 Hb_011631_010--Hb_002897_050 Hb_005499_010 Hb_005499_010 Hb_011631_010--Hb_005499_010 Hb_002107_060 Hb_002107_060 Hb_011631_010--Hb_002107_060 Hb_000638_280 Hb_000638_280 Hb_011631_010--Hb_000638_280 Hb_000084_240 Hb_000084_240 Hb_011631_010--Hb_000084_240 Hb_006452_180--Hb_010287_020 Hb_006452_180--Hb_000048_080 Hb_008725_050 Hb_008725_050 Hb_006452_180--Hb_008725_050 Hb_000089_210 Hb_000089_210 Hb_006452_180--Hb_000089_210 Hb_000868_120 Hb_000868_120 Hb_010287_020--Hb_000868_120 Hb_002110_160 Hb_002110_160 Hb_010287_020--Hb_002110_160 Hb_001699_010 Hb_001699_010 Hb_010287_020--Hb_001699_010 Hb_033642_120 Hb_033642_120 Hb_010287_020--Hb_033642_120 Hb_000445_060 Hb_000445_060 Hb_010287_020--Hb_000445_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.9448 69.6168 62.1676 28.1434 19.4111 16.6829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.03886 24.7795 18.746 16.3856 21.2035

CAGE analysis