Hb_000471_140

Information

Type -
Description -
Location Contig471: 279872-281407
Sequence    

Annotation

kegg
ID pmum:103329959
description putative pentatricopeptide repeat-containing protein At3g28640
nr
ID XP_008230712.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g28640 [Prunus mume]
swissprot
ID Q9LJI9
description Pentatricopeptide repeat-containing protein At3g28660 OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1
trembl
ID F6HV77
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g02510 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at3g28640

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44265: 281011-281367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000471_140 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g28640 [Prunus mume]
2 Hb_005408_030 0.0791528499 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
3 Hb_145022_010 0.0872472036 - - hypothetical protein JCGZ_22699 [Jatropha curcas]
4 Hb_000206_160 0.090136332 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
5 Hb_001998_240 0.091472728 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
6 Hb_002539_070 0.0918284396 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
7 Hb_002631_210 0.09265274 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
8 Hb_011618_070 0.0930661185 - - NMDA receptor-regulated protein [Medicago truncatula]
9 Hb_001488_180 0.0937318819 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
10 Hb_003047_020 0.0963285049 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
11 Hb_000703_200 0.0974759523 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
12 Hb_000676_330 0.0979138094 - - protein with unknown function [Ricinus communis]
13 Hb_000009_410 0.0984578797 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
14 Hb_002675_130 0.0988134774 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
15 Hb_097185_010 0.0996505563 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
16 Hb_004204_010 0.1020078803 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
17 Hb_000958_050 0.1029674396 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
18 Hb_062226_070 0.1035899299 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
19 Hb_000922_250 0.1036477908 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_005977_070 0.1037048941 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000471_140 Hb_000471_140 Hb_005408_030 Hb_005408_030 Hb_000471_140--Hb_005408_030 Hb_145022_010 Hb_145022_010 Hb_000471_140--Hb_145022_010 Hb_000206_160 Hb_000206_160 Hb_000471_140--Hb_000206_160 Hb_001998_240 Hb_001998_240 Hb_000471_140--Hb_001998_240 Hb_002539_070 Hb_002539_070 Hb_000471_140--Hb_002539_070 Hb_002631_210 Hb_002631_210 Hb_000471_140--Hb_002631_210 Hb_000009_410 Hb_000009_410 Hb_005408_030--Hb_000009_410 Hb_001648_020 Hb_001648_020 Hb_005408_030--Hb_001648_020 Hb_001951_170 Hb_001951_170 Hb_005408_030--Hb_001951_170 Hb_005186_040 Hb_005186_040 Hb_005408_030--Hb_005186_040 Hb_011021_050 Hb_011021_050 Hb_005408_030--Hb_011021_050 Hb_000934_210 Hb_000934_210 Hb_005408_030--Hb_000934_210 Hb_000599_190 Hb_000599_190 Hb_145022_010--Hb_000599_190 Hb_000922_250 Hb_000922_250 Hb_145022_010--Hb_000922_250 Hb_001488_180 Hb_001488_180 Hb_145022_010--Hb_001488_180 Hb_145022_010--Hb_005186_040 Hb_002007_160 Hb_002007_160 Hb_145022_010--Hb_002007_160 Hb_027506_010 Hb_027506_010 Hb_000206_160--Hb_027506_010 Hb_000676_330 Hb_000676_330 Hb_000206_160--Hb_000676_330 Hb_003758_010 Hb_003758_010 Hb_000206_160--Hb_003758_010 Hb_005701_050 Hb_005701_050 Hb_000206_160--Hb_005701_050 Hb_000996_020 Hb_000996_020 Hb_000206_160--Hb_000996_020 Hb_000373_170 Hb_000373_170 Hb_000206_160--Hb_000373_170 Hb_002053_150 Hb_002053_150 Hb_001998_240--Hb_002053_150 Hb_006816_280 Hb_006816_280 Hb_001998_240--Hb_006816_280 Hb_004787_050 Hb_004787_050 Hb_001998_240--Hb_004787_050 Hb_003058_260 Hb_003058_260 Hb_001998_240--Hb_003058_260 Hb_003943_110 Hb_003943_110 Hb_001998_240--Hb_003943_110 Hb_002675_130 Hb_002675_130 Hb_001998_240--Hb_002675_130 Hb_000635_060 Hb_000635_060 Hb_002539_070--Hb_000635_060 Hb_004374_110 Hb_004374_110 Hb_002539_070--Hb_004374_110 Hb_002539_070--Hb_003943_110 Hb_000445_090 Hb_000445_090 Hb_002539_070--Hb_000445_090 Hb_012632_010 Hb_012632_010 Hb_002539_070--Hb_012632_010 Hb_000365_240 Hb_000365_240 Hb_002539_070--Hb_000365_240 Hb_011883_020 Hb_011883_020 Hb_002631_210--Hb_011883_020 Hb_002686_140 Hb_002686_140 Hb_002631_210--Hb_002686_140 Hb_001691_200 Hb_001691_200 Hb_002631_210--Hb_001691_200 Hb_023344_160 Hb_023344_160 Hb_002631_210--Hb_023344_160 Hb_005074_020 Hb_005074_020 Hb_002631_210--Hb_005074_020 Hb_002631_210--Hb_005408_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.495798 1.22044 0.704556 0.50712 0.515523 0.455088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.212725 0.549894 0.809269 0.877701 0.951266

CAGE analysis