Hb_004522_040

Information

Type -
Description -
Location Contig4522: 14352-16560
Sequence    

Annotation

kegg
ID pop:POPTR_0004s10980g
description hypothetical protein
nr
ID XP_011021133.1
description PREDICTED: probable galacturonosyltransferase 9 [Populus euphratica]
swissprot
ID Q9LSG3
description Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1
trembl
ID W5HTB2
description Hexosyltransferase OS=Triticum aestivum PE=3 SV=1
Gene Ontology
ID GO:0047262
description probable galacturonosyltransferase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004522_040 0.0 - - PREDICTED: probable galacturonosyltransferase 9 [Populus euphratica]
2 Hb_000127_020 0.146441673 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
3 Hb_000123_110 0.1505184933 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Pyrus x bretschneideri]
4 Hb_085659_010 0.1684692835 - - PREDICTED: uncharacterized protein LOC104216799 [Nicotiana sylvestris]
5 Hb_001186_060 0.1795463821 - - -
6 Hb_000107_650 0.1802961509 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
7 Hb_000163_290 0.1845593241 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
8 Hb_007849_040 0.1889499371 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
9 Hb_002471_170 0.1908685965 - - -
10 Hb_001518_020 0.1943701208 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
11 Hb_006189_010 0.1968647915 - - -
12 Hb_000699_020 0.1970899073 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
13 Hb_031403_010 0.1972124182 - - hypothetical protein POPTR_0001s40140g [Populus trichocarpa]
14 Hb_006499_010 0.2004095806 - - -
15 Hb_010098_080 0.2005100432 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
16 Hb_000567_200 0.2011902763 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
17 Hb_003777_070 0.2018570342 - - -
18 Hb_180333_010 0.2033709219 - - -
19 Hb_003687_140 0.2039857609 - - BnaCnng65050D [Brassica napus]
20 Hb_000033_050 0.2065466107 - - -

Gene co-expression network

sample Hb_004522_040 Hb_004522_040 Hb_000127_020 Hb_000127_020 Hb_004522_040--Hb_000127_020 Hb_000123_110 Hb_000123_110 Hb_004522_040--Hb_000123_110 Hb_085659_010 Hb_085659_010 Hb_004522_040--Hb_085659_010 Hb_001186_060 Hb_001186_060 Hb_004522_040--Hb_001186_060 Hb_000107_650 Hb_000107_650 Hb_004522_040--Hb_000107_650 Hb_000163_290 Hb_000163_290 Hb_004522_040--Hb_000163_290 Hb_000127_020--Hb_000123_110 Hb_002477_230 Hb_002477_230 Hb_000127_020--Hb_002477_230 Hb_010098_070 Hb_010098_070 Hb_000127_020--Hb_010098_070 Hb_000029_270 Hb_000029_270 Hb_000127_020--Hb_000029_270 Hb_000127_020--Hb_000163_290 Hb_001514_190 Hb_001514_190 Hb_000123_110--Hb_001514_190 Hb_006499_010 Hb_006499_010 Hb_000123_110--Hb_006499_010 Hb_005867_040 Hb_005867_040 Hb_000123_110--Hb_005867_040 Hb_002849_210 Hb_002849_210 Hb_000123_110--Hb_002849_210 Hb_031403_010 Hb_031403_010 Hb_000123_110--Hb_031403_010 Hb_002471_170 Hb_002471_170 Hb_085659_010--Hb_002471_170 Hb_026698_010 Hb_026698_010 Hb_085659_010--Hb_026698_010 Hb_180333_010 Hb_180333_010 Hb_085659_010--Hb_180333_010 Hb_004225_180 Hb_004225_180 Hb_085659_010--Hb_004225_180 Hb_000381_080 Hb_000381_080 Hb_085659_010--Hb_000381_080 Hb_001930_070 Hb_001930_070 Hb_001186_060--Hb_001930_070 Hb_000371_110 Hb_000371_110 Hb_001186_060--Hb_000371_110 Hb_001186_060--Hb_006499_010 Hb_001186_060--Hb_000163_290 Hb_006189_010 Hb_006189_010 Hb_001186_060--Hb_006189_010 Hb_000033_050 Hb_000033_050 Hb_001186_060--Hb_000033_050 Hb_030765_020 Hb_030765_020 Hb_000107_650--Hb_030765_020 Hb_029223_030 Hb_029223_030 Hb_000107_650--Hb_029223_030 Hb_000284_010 Hb_000284_010 Hb_000107_650--Hb_000284_010 Hb_060668_010 Hb_060668_010 Hb_000107_650--Hb_060668_010 Hb_000078_030 Hb_000078_030 Hb_000107_650--Hb_000078_030 Hb_012799_060 Hb_012799_060 Hb_000107_650--Hb_012799_060 Hb_000163_290--Hb_006499_010 Hb_000117_040 Hb_000117_040 Hb_000163_290--Hb_000117_040 Hb_001518_020 Hb_001518_020 Hb_000163_290--Hb_001518_020 Hb_003747_240 Hb_003747_240 Hb_000163_290--Hb_003747_240 Hb_000163_290--Hb_000371_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.419265 0.0739549 0 0 0.104865 0.226387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.168162 0.264386 0.117562 0.0807787 0

CAGE analysis