Hb_000107_650

Information

Type -
Description -
Location Contig107: 491900-497926
Sequence    

Annotation

kegg
ID rcu:RCOM_1252890
description Cyclic phosphodiesterase, putative
nr
ID XP_012091853.1
description PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
swissprot
ID O04147
description Cyclic phosphodiesterase OS=Arabidopsis thaliana GN=At4g18930 PE=1 SV=1
trembl
ID A0A067JBH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21632 PE=4 SV=1
Gene Ontology
ID GO:0004112
description cyclic phosphodiesterase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02226: 491501-492415
cDNA
(Sanger)
(ID:Location)		 041_J05r.ab1: 491501-492144

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_650 0.0 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
2 Hb_030765_020 0.1070064374 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_029223_030 0.1220499096 - - hypothetical protein POPTR_0006s12500g [Populus trichocarpa]
4 Hb_000284_010 0.1231936703 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
5 Hb_060668_010 0.130565353 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
6 Hb_000078_030 0.1306553148 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012799_060 0.1356077071 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
8 Hb_000143_050 0.1369330247 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
9 Hb_000062_580 0.1370894357 - - ATP binding protein, putative [Ricinus communis]
10 Hb_003751_120 0.13760664 - - -
11 Hb_005867_040 0.1414280275 transcription factor TF Family: RWP-RK PREDICTED: protein RKD4 [Jatropha curcas]
12 Hb_000926_290 0.1416177417 - - conserved hypothetical protein [Ricinus communis]
13 Hb_183963_020 0.1426900137 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
14 Hb_001478_050 0.1430317436 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
15 Hb_001741_080 0.1433319672 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
16 Hb_000085_300 0.1438966971 - - -
17 Hb_000032_260 0.147036762 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
18 Hb_003106_140 0.1485788797 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000193_230 0.1492706556 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
20 Hb_116349_150 0.1514140686 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_650 Hb_000107_650 Hb_030765_020 Hb_030765_020 Hb_000107_650--Hb_030765_020 Hb_029223_030 Hb_029223_030 Hb_000107_650--Hb_029223_030 Hb_000284_010 Hb_000284_010 Hb_000107_650--Hb_000284_010 Hb_060668_010 Hb_060668_010 Hb_000107_650--Hb_060668_010 Hb_000078_030 Hb_000078_030 Hb_000107_650--Hb_000078_030 Hb_012799_060 Hb_012799_060 Hb_000107_650--Hb_012799_060 Hb_000143_050 Hb_000143_050 Hb_030765_020--Hb_000143_050 Hb_030765_020--Hb_012799_060 Hb_030765_020--Hb_000078_030 Hb_030765_020--Hb_060668_010 Hb_001741_080 Hb_001741_080 Hb_030765_020--Hb_001741_080 Hb_000580_170 Hb_000580_170 Hb_030765_020--Hb_000580_170 Hb_116349_150 Hb_116349_150 Hb_029223_030--Hb_116349_150 Hb_183963_020 Hb_183963_020 Hb_029223_030--Hb_183963_020 Hb_000563_590 Hb_000563_590 Hb_029223_030--Hb_000563_590 Hb_000032_260 Hb_000032_260 Hb_029223_030--Hb_000032_260 Hb_009026_050 Hb_009026_050 Hb_029223_030--Hb_009026_050 Hb_002326_030 Hb_002326_030 Hb_029223_030--Hb_002326_030 Hb_115919_020 Hb_115919_020 Hb_000284_010--Hb_115919_020 Hb_000284_010--Hb_000078_030 Hb_005016_130 Hb_005016_130 Hb_000284_010--Hb_005016_130 Hb_002221_080 Hb_002221_080 Hb_000284_010--Hb_002221_080 Hb_002298_040 Hb_002298_040 Hb_000284_010--Hb_002298_040 Hb_000193_230 Hb_000193_230 Hb_000284_010--Hb_000193_230 Hb_060668_010--Hb_001741_080 Hb_004206_030 Hb_004206_030 Hb_060668_010--Hb_004206_030 Hb_000041_070 Hb_000041_070 Hb_060668_010--Hb_000041_070 Hb_060668_010--Hb_005016_130 Hb_001514_180 Hb_001514_180 Hb_060668_010--Hb_001514_180 Hb_000078_030--Hb_000193_230 Hb_000078_030--Hb_005016_130 Hb_000078_030--Hb_115919_020 Hb_001102_010 Hb_001102_010 Hb_000078_030--Hb_001102_010 Hb_000078_030--Hb_002298_040 Hb_012799_060--Hb_000580_170 Hb_012799_060--Hb_000078_030 Hb_012799_060--Hb_001741_080 Hb_012799_060--Hb_005016_130 Hb_003540_230 Hb_003540_230 Hb_012799_060--Hb_003540_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.49497 0.613827 0 0.0691741 1.38701 3.65965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.58904 6.04086 3.65097 0.896014 0.134816

CAGE analysis