Hb_085659_010

Information

Type -
Description -
Location Contig85659: 10-630
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_009765237.1
description PREDICTED: uncharacterized protein LOC104216799 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085659_010 0.0 - - PREDICTED: uncharacterized protein LOC104216799 [Nicotiana sylvestris]
2 Hb_004522_040 0.1684692835 - - PREDICTED: probable galacturonosyltransferase 9 [Populus euphratica]
3 Hb_002471_170 0.1896205113 - - -
4 Hb_026698_010 0.2054598431 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
5 Hb_180333_010 0.2059367244 - - -
6 Hb_004225_180 0.2152107618 - - bel1 homeotic protein, putative [Ricinus communis]
7 Hb_000381_080 0.2182347463 transcription factor TF Family: SNF2 PREDICTED: DNA repair protein RAD16 [Jatropha curcas]
8 Hb_000699_020 0.2187730308 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
9 Hb_004607_150 0.2194367078 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
10 Hb_010407_070 0.2248355819 - - hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
11 Hb_003978_010 0.2274424171 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
12 Hb_007849_040 0.2303693928 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
13 Hb_009222_020 0.2317751763 - - hypothetical protein AALP_AA5G087000 [Arabis alpina]
14 Hb_017987_070 0.2323489417 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
15 Hb_001587_190 0.235947625 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
16 Hb_003687_140 0.236551246 - - BnaCnng65050D [Brassica napus]
17 Hb_000123_110 0.2369689021 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Pyrus x bretschneideri]
18 Hb_006189_010 0.2412130134 - - -
19 Hb_000107_650 0.2416518891 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
20 Hb_012052_060 0.2418813597 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]

Gene co-expression network

sample Hb_085659_010 Hb_085659_010 Hb_004522_040 Hb_004522_040 Hb_085659_010--Hb_004522_040 Hb_002471_170 Hb_002471_170 Hb_085659_010--Hb_002471_170 Hb_026698_010 Hb_026698_010 Hb_085659_010--Hb_026698_010 Hb_180333_010 Hb_180333_010 Hb_085659_010--Hb_180333_010 Hb_004225_180 Hb_004225_180 Hb_085659_010--Hb_004225_180 Hb_000381_080 Hb_000381_080 Hb_085659_010--Hb_000381_080 Hb_000127_020 Hb_000127_020 Hb_004522_040--Hb_000127_020 Hb_000123_110 Hb_000123_110 Hb_004522_040--Hb_000123_110 Hb_001186_060 Hb_001186_060 Hb_004522_040--Hb_001186_060 Hb_000107_650 Hb_000107_650 Hb_004522_040--Hb_000107_650 Hb_000163_290 Hb_000163_290 Hb_004522_040--Hb_000163_290 Hb_027472_090 Hb_027472_090 Hb_002471_170--Hb_027472_090 Hb_002471_170--Hb_180333_010 Hb_000788_120 Hb_000788_120 Hb_002471_170--Hb_000788_120 Hb_003687_140 Hb_003687_140 Hb_002471_170--Hb_003687_140 Hb_000521_150 Hb_000521_150 Hb_002471_170--Hb_000521_150 Hb_000926_290 Hb_000926_290 Hb_002471_170--Hb_000926_290 Hb_010407_070 Hb_010407_070 Hb_026698_010--Hb_010407_070 Hb_026698_010--Hb_004225_180 Hb_000599_140 Hb_000599_140 Hb_026698_010--Hb_000599_140 Hb_017987_070 Hb_017987_070 Hb_026698_010--Hb_017987_070 Hb_000457_170 Hb_000457_170 Hb_026698_010--Hb_000457_170 Hb_004607_150 Hb_004607_150 Hb_026698_010--Hb_004607_150 Hb_180333_010--Hb_004607_150 Hb_006189_010 Hb_006189_010 Hb_180333_010--Hb_006189_010 Hb_003185_020 Hb_003185_020 Hb_180333_010--Hb_003185_020 Hb_003106_070 Hb_003106_070 Hb_180333_010--Hb_003106_070 Hb_004012_010 Hb_004012_010 Hb_180333_010--Hb_004012_010 Hb_000085_270 Hb_000085_270 Hb_180333_010--Hb_000085_270 Hb_004225_180--Hb_010407_070 Hb_004225_180--Hb_006189_010 Hb_011472_040 Hb_011472_040 Hb_004225_180--Hb_011472_040 Hb_007849_040 Hb_007849_040 Hb_004225_180--Hb_007849_040 Hb_003978_010 Hb_003978_010 Hb_004225_180--Hb_003978_010 Hb_000442_100 Hb_000442_100 Hb_000381_080--Hb_000442_100 Hb_120221_010 Hb_120221_010 Hb_000381_080--Hb_120221_010 Hb_000995_050 Hb_000995_050 Hb_000381_080--Hb_000995_050 Hb_002821_010 Hb_002821_010 Hb_000381_080--Hb_002821_010 Hb_084934_010 Hb_084934_010 Hb_000381_080--Hb_084934_010 Hb_000156_130 Hb_000156_130 Hb_000381_080--Hb_000156_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.549259 0.275495 0 0 0.0411521 0.261861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.305197 0.39976 0.13973 0.131191 0

CAGE analysis