Hb_000679_270

Information

Type -
Description -
Location Contig679: 190846-192825
Sequence    

Annotation

kegg
ID rcu:RCOM_0923910
description clathrin assembly protein, putative (EC:1.3.1.74)
nr
ID XP_012076553.1
description PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
swissprot
ID Q8LF20
description Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2
trembl
ID A0A067KBI9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07157 PE=4 SV=1
Gene Ontology
ID GO:0030136
description clathrin assembly protein at2g25430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53711: 190550-193341
cDNA
(Sanger)
(ID:Location)		 013_B02.ab1: 192774-193327 , 024_K16.ab1: 192394-193114

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_270 0.0 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
2 Hb_000890_060 0.0715614483 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
3 Hb_015978_100 0.0727183442 - - PREDICTED: DNA mismatch repair protein MSH6 [Jatropha curcas]
4 Hb_000789_250 0.0740845961 - - PREDICTED: uncharacterized protein LOC105637809 [Jatropha curcas]
5 Hb_000086_440 0.0780282996 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
6 Hb_132840_110 0.0820060413 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
7 Hb_001635_120 0.0835610505 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
8 Hb_001268_280 0.084431244 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000037_190 0.085642557 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
10 Hb_102698_010 0.0873928705 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
11 Hb_012395_140 0.0876671349 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
12 Hb_002732_040 0.0882141719 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
13 Hb_005650_010 0.0886023725 - - ATP binding protein, putative [Ricinus communis]
14 Hb_020378_030 0.0896903372 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
15 Hb_006658_020 0.0904601318 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
16 Hb_002495_080 0.0904646953 - - PREDICTED: polygalacturonase ADPG2 [Jatropha curcas]
17 Hb_001329_140 0.0907529046 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
18 Hb_000252_050 0.0917759272 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
19 Hb_000537_050 0.0924277585 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
20 Hb_000590_050 0.0925702328 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]

Gene co-expression network

sample Hb_000679_270 Hb_000679_270 Hb_000890_060 Hb_000890_060 Hb_000679_270--Hb_000890_060 Hb_015978_100 Hb_015978_100 Hb_000679_270--Hb_015978_100 Hb_000789_250 Hb_000789_250 Hb_000679_270--Hb_000789_250 Hb_000086_440 Hb_000086_440 Hb_000679_270--Hb_000086_440 Hb_132840_110 Hb_132840_110 Hb_000679_270--Hb_132840_110 Hb_001635_120 Hb_001635_120 Hb_000679_270--Hb_001635_120 Hb_000590_050 Hb_000590_050 Hb_000890_060--Hb_000590_050 Hb_000008_290 Hb_000008_290 Hb_000890_060--Hb_000008_290 Hb_000327_270 Hb_000327_270 Hb_000890_060--Hb_000327_270 Hb_001814_030 Hb_001814_030 Hb_000890_060--Hb_001814_030 Hb_007426_110 Hb_007426_110 Hb_000890_060--Hb_007426_110 Hb_020378_030 Hb_020378_030 Hb_000890_060--Hb_020378_030 Hb_000183_050 Hb_000183_050 Hb_015978_100--Hb_000183_050 Hb_001935_160 Hb_001935_160 Hb_015978_100--Hb_001935_160 Hb_002391_050 Hb_002391_050 Hb_015978_100--Hb_002391_050 Hb_005563_060 Hb_005563_060 Hb_015978_100--Hb_005563_060 Hb_000252_050 Hb_000252_050 Hb_015978_100--Hb_000252_050 Hb_000313_120 Hb_000313_120 Hb_000789_250--Hb_000313_120 Hb_000789_250--Hb_020378_030 Hb_012395_140 Hb_012395_140 Hb_000789_250--Hb_012395_140 Hb_000537_050 Hb_000537_050 Hb_000789_250--Hb_000537_050 Hb_001369_130 Hb_001369_130 Hb_000789_250--Hb_001369_130 Hb_004586_220 Hb_004586_220 Hb_000789_250--Hb_004586_220 Hb_001109_060 Hb_001109_060 Hb_000086_440--Hb_001109_060 Hb_005227_010 Hb_005227_010 Hb_000086_440--Hb_005227_010 Hb_162275_040 Hb_162275_040 Hb_000086_440--Hb_162275_040 Hb_000035_170 Hb_000035_170 Hb_000086_440--Hb_000035_170 Hb_000086_440--Hb_132840_110 Hb_006501_090 Hb_006501_090 Hb_000086_440--Hb_006501_090 Hb_000214_050 Hb_000214_050 Hb_132840_110--Hb_000214_050 Hb_001789_190 Hb_001789_190 Hb_132840_110--Hb_001789_190 Hb_000340_420 Hb_000340_420 Hb_132840_110--Hb_000340_420 Hb_001014_100 Hb_001014_100 Hb_132840_110--Hb_001014_100 Hb_002811_270 Hb_002811_270 Hb_132840_110--Hb_002811_270 Hb_000028_130 Hb_000028_130 Hb_001635_120--Hb_000028_130 Hb_000017_220 Hb_000017_220 Hb_001635_120--Hb_000017_220 Hb_005582_040 Hb_005582_040 Hb_001635_120--Hb_005582_040 Hb_000174_270 Hb_000174_270 Hb_001635_120--Hb_000174_270 Hb_001999_290 Hb_001999_290 Hb_001635_120--Hb_001999_290 Hb_001473_110 Hb_001473_110 Hb_001635_120--Hb_001473_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.5555 37.398 27.3929 40.6399 29.6358 32.4954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.2447 13.0544 31.5229 33.4725 46.5493

CAGE analysis