Hb_079820_010

Information

Type -
Description -
Location Contig79820: 9-2372
Sequence    

Annotation

kegg
ID rcu:RCOM_1374830
description Diphthamide biosynthesis protein, putative
nr
ID XP_012074066.1
description PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
swissprot
ID Q7SC98
description Diphthamide biosynthesis protein 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=dph-1 PE=3 SV=1
trembl
ID A0A067KJJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08675 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079820_010 0.0 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
2 Hb_002411_170 0.069762105 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
3 Hb_000188_100 0.081309189 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
4 Hb_003038_030 0.0816507715 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
5 Hb_000386_040 0.0868520824 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
6 Hb_006447_010 0.0886801068 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
7 Hb_003120_060 0.0924187587 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
8 Hb_125000_010 0.0926992649 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
9 Hb_148912_010 0.0936510537 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000019_230 0.0955376319 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
11 Hb_000200_210 0.0966158166 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002942_020 0.0986688064 - - nucleotide binding protein, putative [Ricinus communis]
13 Hb_000500_130 0.0986865855 - - small GTPase [Hevea brasiliensis]
14 Hb_000162_090 0.0988145891 - - PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]
15 Hb_004440_050 0.0990998441 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
16 Hb_007380_070 0.0993745408 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
17 Hb_000473_040 0.1008519316 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
18 Hb_000270_840 0.1010172927 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
19 Hb_001195_760 0.1014676641 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
20 Hb_000172_370 0.10159641 - - -

Gene co-expression network

sample Hb_079820_010 Hb_079820_010 Hb_002411_170 Hb_002411_170 Hb_079820_010--Hb_002411_170 Hb_000188_100 Hb_000188_100 Hb_079820_010--Hb_000188_100 Hb_003038_030 Hb_003038_030 Hb_079820_010--Hb_003038_030 Hb_000386_040 Hb_000386_040 Hb_079820_010--Hb_000386_040 Hb_006447_010 Hb_006447_010 Hb_079820_010--Hb_006447_010 Hb_003120_060 Hb_003120_060 Hb_079820_010--Hb_003120_060 Hb_004440_050 Hb_004440_050 Hb_002411_170--Hb_004440_050 Hb_002411_170--Hb_003038_030 Hb_125000_010 Hb_125000_010 Hb_002411_170--Hb_125000_010 Hb_148912_010 Hb_148912_010 Hb_002411_170--Hb_148912_010 Hb_010180_020 Hb_010180_020 Hb_002411_170--Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_002411_170--Hb_001604_080 Hb_000787_110 Hb_000787_110 Hb_000188_100--Hb_000787_110 Hb_000188_100--Hb_003120_060 Hb_000019_230 Hb_000019_230 Hb_000188_100--Hb_000019_230 Hb_000188_100--Hb_003038_030 Hb_000188_100--Hb_000386_040 Hb_003038_030--Hb_148912_010 Hb_141131_010 Hb_141131_010 Hb_003038_030--Hb_141131_010 Hb_003038_030--Hb_000019_230 Hb_000172_370 Hb_000172_370 Hb_003038_030--Hb_000172_370 Hb_004545_060 Hb_004545_060 Hb_003038_030--Hb_004545_060 Hb_000049_040 Hb_000049_040 Hb_000386_040--Hb_000049_040 Hb_000386_040--Hb_003038_030 Hb_000943_070 Hb_000943_070 Hb_000386_040--Hb_000943_070 Hb_001246_100 Hb_001246_100 Hb_000386_040--Hb_001246_100 Hb_000386_040--Hb_000172_370 Hb_006447_010--Hb_001246_100 Hb_001243_050 Hb_001243_050 Hb_006447_010--Hb_001243_050 Hb_000442_160 Hb_000442_160 Hb_006447_010--Hb_000442_160 Hb_001030_120 Hb_001030_120 Hb_006447_010--Hb_001030_120 Hb_133271_020 Hb_133271_020 Hb_006447_010--Hb_133271_020 Hb_012340_030 Hb_012340_030 Hb_006447_010--Hb_012340_030 Hb_003120_060--Hb_000019_230 Hb_001214_130 Hb_001214_130 Hb_003120_060--Hb_001214_130 Hb_003005_020 Hb_003005_020 Hb_003120_060--Hb_003005_020 Hb_003106_130 Hb_003106_130 Hb_003120_060--Hb_003106_130 Hb_003120_060--Hb_003038_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67195 1.15741 1.29017 1.01674 3.00038 4.75398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.60368 3.66179 2.69317 0.39463 0.678025

CAGE analysis