Hb_002805_160

Information

Type -
Description -
Location Contig2805: 127535-127855
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04470g
description POPTRDRAFT_654678; hypothetical protein
nr
ID XP_012074486.1
description PREDICTED: uncharacterized protein LOC105635952 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KLU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08383 PE=4 SV=1
Gene Ontology
ID GO:0009536
description PREDICTED: uncharacterized protein LOC105635952

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29286: 127091-129236
cDNA
(Sanger)
(ID:Location)		 047_A04.ab1: 127597-129233

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_160 0.0 - - PREDICTED: uncharacterized protein LOC105635952 [Jatropha curcas]
2 Hb_189147_010 0.0955635898 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
3 Hb_000465_470 0.1084058336 - - unknown [Picea sitchensis]
4 Hb_000025_140 0.1103175756 - - las1-like family protein [Populus trichocarpa]
5 Hb_012022_160 0.1159212797 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
6 Hb_075481_030 0.1181693119 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
7 Hb_001752_030 0.1192270058 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
8 Hb_000502_050 0.1200682741 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
9 Hb_000032_490 0.1208410341 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
10 Hb_000236_100 0.1210212217 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
11 Hb_000732_120 0.1211784517 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
12 Hb_003052_140 0.1221218315 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
13 Hb_140506_010 0.1226686191 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
14 Hb_001171_070 0.1228298091 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial-like isoform X1 [Jatropha curcas]
15 Hb_000275_170 0.1246817872 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
16 Hb_000125_170 0.1247880066 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
17 Hb_006185_050 0.1249547134 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
18 Hb_003371_150 0.1261441892 - - PREDICTED: serine/threonine-protein kinase 10 [Jatropha curcas]
19 Hb_000861_070 0.1262251807 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004724_320 0.1262911855 - - Vesicle-associated membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002805_160 Hb_002805_160 Hb_189147_010 Hb_189147_010 Hb_002805_160--Hb_189147_010 Hb_000465_470 Hb_000465_470 Hb_002805_160--Hb_000465_470 Hb_000025_140 Hb_000025_140 Hb_002805_160--Hb_000025_140 Hb_012022_160 Hb_012022_160 Hb_002805_160--Hb_012022_160 Hb_075481_030 Hb_075481_030 Hb_002805_160--Hb_075481_030 Hb_001752_030 Hb_001752_030 Hb_002805_160--Hb_001752_030 Hb_007164_020 Hb_007164_020 Hb_189147_010--Hb_007164_020 Hb_106552_050 Hb_106552_050 Hb_189147_010--Hb_106552_050 Hb_189147_010--Hb_000465_470 Hb_003371_150 Hb_003371_150 Hb_189147_010--Hb_003371_150 Hb_003052_140 Hb_003052_140 Hb_189147_010--Hb_003052_140 Hb_001541_260 Hb_001541_260 Hb_000465_470--Hb_001541_260 Hb_000465_470--Hb_106552_050 Hb_000236_100 Hb_000236_100 Hb_000465_470--Hb_000236_100 Hb_000663_040 Hb_000663_040 Hb_000465_470--Hb_000663_040 Hb_002301_220 Hb_002301_220 Hb_000465_470--Hb_002301_220 Hb_000032_490 Hb_000032_490 Hb_000465_470--Hb_000032_490 Hb_001369_420 Hb_001369_420 Hb_000025_140--Hb_001369_420 Hb_002506_020 Hb_002506_020 Hb_000025_140--Hb_002506_020 Hb_048937_040 Hb_048937_040 Hb_000025_140--Hb_048937_040 Hb_007904_200 Hb_007904_200 Hb_000025_140--Hb_007904_200 Hb_006185_050 Hb_006185_050 Hb_000025_140--Hb_006185_050 Hb_000645_050 Hb_000645_050 Hb_000025_140--Hb_000645_050 Hb_000428_050 Hb_000428_050 Hb_012022_160--Hb_000428_050 Hb_004310_150 Hb_004310_150 Hb_012022_160--Hb_004310_150 Hb_003010_030 Hb_003010_030 Hb_012022_160--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_012022_160--Hb_000093_160 Hb_012022_160--Hb_006185_050 Hb_001195_760 Hb_001195_760 Hb_012022_160--Hb_001195_760 Hb_000521_260 Hb_000521_260 Hb_075481_030--Hb_000521_260 Hb_004162_280 Hb_004162_280 Hb_075481_030--Hb_004162_280 Hb_005276_210 Hb_005276_210 Hb_075481_030--Hb_005276_210 Hb_004724_320 Hb_004724_320 Hb_075481_030--Hb_004724_320 Hb_000861_070 Hb_000861_070 Hb_075481_030--Hb_000861_070 Hb_000173_510 Hb_000173_510 Hb_075481_030--Hb_000173_510 Hb_000803_110 Hb_000803_110 Hb_001752_030--Hb_000803_110 Hb_001752_030--Hb_000465_470 Hb_000832_090 Hb_000832_090 Hb_001752_030--Hb_000832_090 Hb_002351_020 Hb_002351_020 Hb_001752_030--Hb_002351_020 Hb_007108_030 Hb_007108_030 Hb_001752_030--Hb_007108_030 Hb_001752_030--Hb_000032_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.9098 39.1726 18.2872 23.5015 56.1969 46.8251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9229 43.7106 36.363 8.10673 17.6091

CAGE analysis