Hb_007595_040

Information

Type -
Description -
Location Contig7595: 45845-49864
Sequence    

Annotation

kegg
ID mtr:MTR_4g051430
description 50S ribosomal protein L2-B
nr
ID YP_008592707.1
description ribosomal protein L2 (chloroplast) [Berberis bealei]
swissprot
ID B1NWJ1
description 50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1
trembl
ID T1WMD4
description 50S ribosomal protein L2, chloroplastic OS=Berberis bealei GN=rpl2 PE=3 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein l2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007595_040 0.0 - - ribosomal protein L2 (chloroplast) [Berberis bealei]
2 Hb_052469_020 0.0026762903 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Vitis vinifera]
3 Hb_105785_010 0.048264825 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
4 Hb_005337_010 0.0554086403 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
5 Hb_007456_030 0.0572514411 - - -
6 Hb_000367_150 0.0973784427 - - -
7 Hb_002762_010 0.1050343523 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
8 Hb_043960_010 0.1146006927 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000815_110 0.1195886779 - - RecName: Full=Casparian strip membrane protein 4; Short=RcCASP4 [Ricinus communis]
10 Hb_000326_110 0.1375627733 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
11 Hb_007242_030 0.1451201297 - - PREDICTED: methylesterase 3-like isoform X2 [Tarenaya hassleriana]
12 Hb_002041_020 0.1470498449 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
13 Hb_000134_240 0.1472968267 - - cytochrome P450, putative [Ricinus communis]
14 Hb_018746_010 0.1517649152 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
15 Hb_163122_010 0.1528889894 - - protein binding protein, putative [Ricinus communis]
16 Hb_002928_050 0.1531242673 - - -
17 Hb_002081_240 0.1533782484 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
18 Hb_018710_050 0.153451856 - - -
19 Hb_008013_030 0.1537777613 - - -
20 Hb_001514_140 0.1542180111 - - -

Gene co-expression network

sample Hb_007595_040 Hb_007595_040 Hb_052469_020 Hb_052469_020 Hb_007595_040--Hb_052469_020 Hb_105785_010 Hb_105785_010 Hb_007595_040--Hb_105785_010 Hb_005337_010 Hb_005337_010 Hb_007595_040--Hb_005337_010 Hb_007456_030 Hb_007456_030 Hb_007595_040--Hb_007456_030 Hb_000367_150 Hb_000367_150 Hb_007595_040--Hb_000367_150 Hb_002762_010 Hb_002762_010 Hb_007595_040--Hb_002762_010 Hb_052469_020--Hb_105785_010 Hb_052469_020--Hb_007456_030 Hb_052469_020--Hb_005337_010 Hb_052469_020--Hb_000367_150 Hb_052469_020--Hb_002762_010 Hb_105785_010--Hb_007456_030 Hb_105785_010--Hb_000367_150 Hb_105785_010--Hb_005337_010 Hb_000134_240 Hb_000134_240 Hb_105785_010--Hb_000134_240 Hb_005337_010--Hb_002762_010 Hb_043960_010 Hb_043960_010 Hb_005337_010--Hb_043960_010 Hb_005337_010--Hb_007456_030 Hb_018746_010 Hb_018746_010 Hb_005337_010--Hb_018746_010 Hb_007456_030--Hb_000367_150 Hb_001691_130 Hb_001691_130 Hb_007456_030--Hb_001691_130 Hb_000367_150--Hb_001691_130 Hb_001231_020 Hb_001231_020 Hb_000367_150--Hb_001231_020 Hb_106274_010 Hb_106274_010 Hb_000367_150--Hb_106274_010 Hb_002630_030 Hb_002630_030 Hb_000367_150--Hb_002630_030 Hb_005551_030 Hb_005551_030 Hb_000367_150--Hb_005551_030 Hb_002762_010--Hb_043960_010 Hb_002762_010--Hb_018746_010 Hb_001514_140 Hb_001514_140 Hb_002762_010--Hb_001514_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0748297 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0139718 0.21532

CAGE analysis