Hb_000000_090

Information

Type -
Description -
Location Contig0: 175966-178622
Sequence    

Annotation

kegg
ID rcu:RCOM_1593310
description hypothetical protein
nr
ID XP_002510323.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7N0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1593310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00011: 176219-178473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_031194_020 0.0842962867 - - BnaCnng13030D [Brassica napus]
3 Hb_000645_270 0.0857175596 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
4 Hb_052139_010 0.087462313 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
5 Hb_000270_040 0.10305847 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007101_090 0.111206255 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
7 Hb_003622_050 0.1118792944 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
8 Hb_003947_020 0.1134807738 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
9 Hb_004855_030 0.1138250129 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
10 Hb_101097_010 0.1141143236 - - polyprotein [Citrus endogenous pararetrovirus]
11 Hb_001951_040 0.1147516038 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
12 Hb_000832_050 0.1190037111 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
13 Hb_001610_100 0.1195255585 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
14 Hb_001001_130 0.1223272058 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
15 Hb_001856_290 0.1224696645 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
16 Hb_054865_040 0.1241071377 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
17 Hb_043327_010 0.1245858086 - - PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
18 Hb_003251_010 0.1250870575 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
19 Hb_001089_120 0.1251259608 - - PREDICTED: pectinesterase [Jatropha curcas]
20 Hb_000504_220 0.1260210628 - - hypothetical protein JCGZ_10249 [Jatropha curcas]

Gene co-expression network

sample Hb_000000_090 Hb_000000_090 Hb_031194_020 Hb_031194_020 Hb_000000_090--Hb_031194_020 Hb_000645_270 Hb_000645_270 Hb_000000_090--Hb_000645_270 Hb_052139_010 Hb_052139_010 Hb_000000_090--Hb_052139_010 Hb_000270_040 Hb_000270_040 Hb_000000_090--Hb_000270_040 Hb_007101_090 Hb_007101_090 Hb_000000_090--Hb_007101_090 Hb_003622_050 Hb_003622_050 Hb_000000_090--Hb_003622_050 Hb_031194_020--Hb_000645_270 Hb_031194_020--Hb_003622_050 Hb_031194_020--Hb_052139_010 Hb_031194_020--Hb_007101_090 Hb_000844_060 Hb_000844_060 Hb_031194_020--Hb_000844_060 Hb_000645_270--Hb_003622_050 Hb_000645_270--Hb_007101_090 Hb_003947_020 Hb_003947_020 Hb_000645_270--Hb_003947_020 Hb_000645_270--Hb_052139_010 Hb_009095_020 Hb_009095_020 Hb_000645_270--Hb_009095_020 Hb_001856_290 Hb_001856_290 Hb_052139_010--Hb_001856_290 Hb_052139_010--Hb_007101_090 Hb_001001_130 Hb_001001_130 Hb_052139_010--Hb_001001_130 Hb_004855_030 Hb_004855_030 Hb_000270_040--Hb_004855_030 Hb_000083_010 Hb_000083_010 Hb_000270_040--Hb_000083_010 Hb_000270_040--Hb_052139_010 Hb_003208_010 Hb_003208_010 Hb_000270_040--Hb_003208_010 Hb_000977_260 Hb_000977_260 Hb_000270_040--Hb_000977_260 Hb_101097_010 Hb_101097_010 Hb_000270_040--Hb_101097_010 Hb_007101_090--Hb_001001_130 Hb_007101_090--Hb_001856_290 Hb_001999_330 Hb_001999_330 Hb_007101_090--Hb_001999_330 Hb_002010_010 Hb_002010_010 Hb_007101_090--Hb_002010_010 Hb_003622_050--Hb_000844_060 Hb_001080_290 Hb_001080_290 Hb_003622_050--Hb_001080_290 Hb_002600_110 Hb_002600_110 Hb_003622_050--Hb_002600_110 Hb_002188_150 Hb_002188_150 Hb_003622_050--Hb_002188_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0199902 0 0.803564 0.725941 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0665388 0.173218 7.5468

CAGE analysis