Hb_004871_030

Information

Type -
Description -
Location Contig4871: 21962-26008
Sequence    

Annotation

kegg
ID rcu:RCOM_1515610
description hypothetical protein
nr
ID XP_002523974.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDA5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1515610 PE=4 SV=1
Gene Ontology
ID GO:0009941
description alpha beta-hydrolases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45058: 21940-25052 , PASA_asmbl_45059: 24400-25040
cDNA
(Sanger)
(ID:Location)		 008_I20.ab1: 22556-25052

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004871_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002870_070 0.0667396747 - - multidrug resistance pump, putative [Ricinus communis]
3 Hb_003847_070 0.1032091307 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
4 Hb_001856_240 0.1042873424 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
5 Hb_000008_160 0.1056529177 - - carboxy-lyase, putative [Ricinus communis]
6 Hb_000185_010 0.1058281515 - - Alliin lyase precursor, putative [Ricinus communis]
7 Hb_003171_040 0.1063214245 - - multidrug resistance pump, putative [Ricinus communis]
8 Hb_000069_760 0.1086553079 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
9 Hb_000390_160 0.1145026426 - - PREDICTED: adenosine kinase [Jatropha curcas]
10 Hb_000012_370 0.1180319084 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000676_320 0.120410622 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
12 Hb_002762_050 0.1206675027 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
13 Hb_087599_010 0.1216345043 - - PREDICTED: tropinone reductase homolog [Solanum tuberosum]
14 Hb_075050_010 0.1221252914 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
15 Hb_000694_080 0.1231337267 - - phosphoribulose kinase, putative [Ricinus communis]
16 Hb_003020_120 0.1237465141 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
17 Hb_000589_410 0.1255637224 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic-like isoform X1 [Populus euphratica]
18 Hb_151380_010 0.1255698446 - - ribosomal protein S4 [Hevea brasiliensis]
19 Hb_176135_010 0.1256843563 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_003777_080 0.1261250202 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]

Gene co-expression network

sample Hb_004871_030 Hb_004871_030 Hb_002870_070 Hb_002870_070 Hb_004871_030--Hb_002870_070 Hb_003847_070 Hb_003847_070 Hb_004871_030--Hb_003847_070 Hb_001856_240 Hb_001856_240 Hb_004871_030--Hb_001856_240 Hb_000008_160 Hb_000008_160 Hb_004871_030--Hb_000008_160 Hb_000185_010 Hb_000185_010 Hb_004871_030--Hb_000185_010 Hb_003171_040 Hb_003171_040 Hb_004871_030--Hb_003171_040 Hb_002870_070--Hb_001856_240 Hb_002870_070--Hb_000008_160 Hb_002870_070--Hb_000185_010 Hb_000069_760 Hb_000069_760 Hb_002870_070--Hb_000069_760 Hb_002870_070--Hb_003847_070 Hb_176135_010 Hb_176135_010 Hb_003847_070--Hb_176135_010 Hb_003847_070--Hb_001856_240 Hb_000083_180 Hb_000083_180 Hb_003847_070--Hb_000083_180 Hb_003020_120 Hb_003020_120 Hb_003847_070--Hb_003020_120 Hb_008748_050 Hb_008748_050 Hb_003847_070--Hb_008748_050 Hb_000221_130 Hb_000221_130 Hb_003847_070--Hb_000221_130 Hb_001856_240--Hb_008748_050 Hb_001856_240--Hb_176135_010 Hb_000012_370 Hb_000012_370 Hb_001856_240--Hb_000012_370 Hb_001006_160 Hb_001006_160 Hb_001856_240--Hb_001006_160 Hb_002093_020 Hb_002093_020 Hb_000008_160--Hb_002093_020 Hb_000008_160--Hb_000185_010 Hb_001751_050 Hb_001751_050 Hb_000008_160--Hb_001751_050 Hb_002762_050 Hb_002762_050 Hb_000008_160--Hb_002762_050 Hb_087599_010 Hb_087599_010 Hb_000008_160--Hb_087599_010 Hb_000185_010--Hb_000069_760 Hb_000185_010--Hb_000012_370 Hb_000185_010--Hb_087599_010 Hb_156093_010 Hb_156093_010 Hb_000185_010--Hb_156093_010 Hb_006132_080 Hb_006132_080 Hb_000185_010--Hb_006132_080 Hb_000026_060 Hb_000026_060 Hb_003171_040--Hb_000026_060 Hb_004146_030 Hb_004146_030 Hb_003171_040--Hb_004146_030 Hb_123689_010 Hb_123689_010 Hb_003171_040--Hb_123689_010 Hb_001579_050 Hb_001579_050 Hb_003171_040--Hb_001579_050 Hb_004242_200 Hb_004242_200 Hb_003171_040--Hb_004242_200 Hb_001691_180 Hb_001691_180 Hb_003171_040--Hb_001691_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0888037 0.196372 16.8632 5.71819 0.0138626 0.0559947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.033741 0.0265439 0.845537 1.3575 34.772

CAGE analysis