Hb_011618_060

Information

Type -
Description -
Location Contig11618: 86712-91537
Sequence    

Annotation

kegg
ID rcu:RCOM_0894660
description DNA-repair protein xrcc1, putative
nr
ID XP_012073298.1
description PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]
swissprot
ID Q24JK4
description DNA-repair protein XRCC1 OS=Arabidopsis thaliana GN=XRCC1 PE=1 SV=1
trembl
ID A0A067KM35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06238 PE=4 SV=1
Gene Ontology
ID GO:0006259
description dna-repair protein xrcc1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04991: 86188-87357 , PASA_asmbl_04992: 89179-90159
cDNA
(Sanger)
(ID:Location)		 010_G20.ab1: 86188-87357

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011618_060 0.0 - - PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]
2 Hb_002027_350 0.0773939347 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
3 Hb_000099_150 0.1044318383 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
4 Hb_006153_110 0.1046000658 - - dimethylaniline monooxygenase, putative [Ricinus communis]
5 Hb_000164_100 0.1112415824 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
6 Hb_000010_190 0.1117726826 - - PREDICTED: protein-L-isoaspartate O-methyltransferase 1 isoform X2 [Jatropha curcas]
7 Hb_001691_140 0.1139910378 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
8 Hb_017987_050 0.1152510091 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
9 Hb_007304_090 0.118775306 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
10 Hb_003669_020 0.1225688204 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
11 Hb_061195_020 0.1226635617 - - PREDICTED: uncharacterized protein LOC101990594 [Microtus ochrogaster]
12 Hb_000331_470 0.1227009667 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
13 Hb_000321_160 0.1241464193 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
14 Hb_004324_090 0.1254380765 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
15 Hb_005116_060 0.1308669394 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
16 Hb_163256_020 0.1311358236 - - fructokinase [Manihot esculenta]
17 Hb_019280_050 0.1342519567 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
18 Hb_001153_180 0.1343100491 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
19 Hb_000225_060 0.1344901381 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
20 Hb_006478_040 0.1364548527 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_011618_060 Hb_011618_060 Hb_002027_350 Hb_002027_350 Hb_011618_060--Hb_002027_350 Hb_000099_150 Hb_000099_150 Hb_011618_060--Hb_000099_150 Hb_006153_110 Hb_006153_110 Hb_011618_060--Hb_006153_110 Hb_000164_100 Hb_000164_100 Hb_011618_060--Hb_000164_100 Hb_000010_190 Hb_000010_190 Hb_011618_060--Hb_000010_190 Hb_001691_140 Hb_001691_140 Hb_011618_060--Hb_001691_140 Hb_002027_350--Hb_000164_100 Hb_002027_350--Hb_000099_150 Hb_003669_020 Hb_003669_020 Hb_002027_350--Hb_003669_020 Hb_002534_100 Hb_002534_100 Hb_002027_350--Hb_002534_100 Hb_002027_350--Hb_000010_190 Hb_000099_150--Hb_001691_140 Hb_000136_260 Hb_000136_260 Hb_000099_150--Hb_000136_260 Hb_000327_230 Hb_000327_230 Hb_000099_150--Hb_000327_230 Hb_017987_050 Hb_017987_050 Hb_000099_150--Hb_017987_050 Hb_002078_140 Hb_002078_140 Hb_000099_150--Hb_002078_140 Hb_000331_470 Hb_000331_470 Hb_006153_110--Hb_000331_470 Hb_006153_110--Hb_000010_190 Hb_000217_030 Hb_000217_030 Hb_006153_110--Hb_000217_030 Hb_010098_050 Hb_010098_050 Hb_006153_110--Hb_010098_050 Hb_007304_090 Hb_007304_090 Hb_006153_110--Hb_007304_090 Hb_011512_070 Hb_011512_070 Hb_006153_110--Hb_011512_070 Hb_044653_040 Hb_044653_040 Hb_000164_100--Hb_044653_040 Hb_000176_020 Hb_000176_020 Hb_000164_100--Hb_000176_020 Hb_000164_100--Hb_003669_020 Hb_000164_100--Hb_002534_100 Hb_004712_210 Hb_004712_210 Hb_000164_100--Hb_004712_210 Hb_000336_150 Hb_000336_150 Hb_000010_190--Hb_000336_150 Hb_001470_030 Hb_001470_030 Hb_000010_190--Hb_001470_030 Hb_001723_020 Hb_001723_020 Hb_000010_190--Hb_001723_020 Hb_004324_090 Hb_004324_090 Hb_000010_190--Hb_004324_090 Hb_006478_040 Hb_006478_040 Hb_000010_190--Hb_006478_040 Hb_001691_140--Hb_002078_140 Hb_011671_100 Hb_011671_100 Hb_001691_140--Hb_011671_100 Hb_001691_140--Hb_000217_030 Hb_001863_430 Hb_001863_430 Hb_001691_140--Hb_001863_430 Hb_029388_020 Hb_029388_020 Hb_001691_140--Hb_029388_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.86508 9.81561 8.18035 3.93461 3.23888 2.69351
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.80011 15.2514 5.43318 8.20847 4.65182

CAGE analysis