Hb_000032_280

Information

Type -
Description -
Location Contig32: 241129-248098
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13950g
description POPTRDRAFT_817412; acyl-coA synthetase family protein
nr
ID XP_012086723.1
description PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
swissprot
ID Q9T0A0
description Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1
trembl
ID A0A067JZ80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20456 PE=4 SV=1
Gene Ontology
ID GO:0003824
description long chain acyl- synthetase 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33713: 240932-248059 , PASA_asmbl_33714: 242898-243041 , PASA_asmbl_33715: 243299-243554 , PASA_asmbl_33716: 246334-246539
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_280 0.0 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
2 Hb_007632_240 0.0768397907 - - transporter, putative [Ricinus communis]
3 Hb_004410_030 0.0772599498 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_003847_130 0.0789538984 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
5 Hb_001473_180 0.0847015647 - - glutathione reductase [Hevea brasiliensis]
6 Hb_001289_080 0.0893030398 - - PREDICTED: protein YLS9-like [Jatropha curcas]
7 Hb_012733_030 0.0919408086 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
8 Hb_166222_010 0.0924056279 - - hypothetical protein POPTR_0017s08350g [Populus trichocarpa]
9 Hb_005147_030 0.0944425258 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
10 Hb_002600_150 0.0947054693 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
11 Hb_006198_120 0.0948160944 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
12 Hb_001301_100 0.0948509789 - - transporter, putative [Ricinus communis]
13 Hb_003647_130 0.094900203 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
14 Hb_000139_370 0.0953082179 - - ubiquitin-activating enzyme E1c, putative [Ricinus communis]
15 Hb_004619_030 0.0958665651 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
16 Hb_009079_030 0.0959913377 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
17 Hb_000031_120 0.0969420307 - - PREDICTED: uncharacterized protein LOC105637488 [Jatropha curcas]
18 Hb_000207_180 0.0977967025 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
19 Hb_000617_180 0.0981284099 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
20 Hb_006569_030 0.0984541219 - - PREDICTED: uncharacterized protein LOC105650907 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_280 Hb_000032_280 Hb_007632_240 Hb_007632_240 Hb_000032_280--Hb_007632_240 Hb_004410_030 Hb_004410_030 Hb_000032_280--Hb_004410_030 Hb_003847_130 Hb_003847_130 Hb_000032_280--Hb_003847_130 Hb_001473_180 Hb_001473_180 Hb_000032_280--Hb_001473_180 Hb_001289_080 Hb_001289_080 Hb_000032_280--Hb_001289_080 Hb_012733_030 Hb_012733_030 Hb_000032_280--Hb_012733_030 Hb_007632_240--Hb_003847_130 Hb_000638_120 Hb_000638_120 Hb_007632_240--Hb_000638_120 Hb_003438_050 Hb_003438_050 Hb_007632_240--Hb_003438_050 Hb_003025_110 Hb_003025_110 Hb_007632_240--Hb_003025_110 Hb_003375_070 Hb_003375_070 Hb_007632_240--Hb_003375_070 Hb_007632_240--Hb_004410_030 Hb_001357_250 Hb_001357_250 Hb_004410_030--Hb_001357_250 Hb_000011_200 Hb_000011_200 Hb_004410_030--Hb_000011_200 Hb_004410_030--Hb_003025_110 Hb_000225_040 Hb_000225_040 Hb_004410_030--Hb_000225_040 Hb_002271_030 Hb_002271_030 Hb_004410_030--Hb_002271_030 Hb_004619_030 Hb_004619_030 Hb_004410_030--Hb_004619_030 Hb_001442_040 Hb_001442_040 Hb_003847_130--Hb_001442_040 Hb_007645_100 Hb_007645_100 Hb_003847_130--Hb_007645_100 Hb_000466_140 Hb_000466_140 Hb_003847_130--Hb_000466_140 Hb_002592_060 Hb_002592_060 Hb_003847_130--Hb_002592_060 Hb_003847_130--Hb_004410_030 Hb_000592_030 Hb_000592_030 Hb_001473_180--Hb_000592_030 Hb_002600_150 Hb_002600_150 Hb_001473_180--Hb_002600_150 Hb_009270_020 Hb_009270_020 Hb_001473_180--Hb_009270_020 Hb_009079_030 Hb_009079_030 Hb_001473_180--Hb_009079_030 Hb_000617_180 Hb_000617_180 Hb_001473_180--Hb_000617_180 Hb_002815_030 Hb_002815_030 Hb_001473_180--Hb_002815_030 Hb_001289_080--Hb_000638_120 Hb_001289_080--Hb_004410_030 Hb_004689_050 Hb_004689_050 Hb_001289_080--Hb_004689_050 Hb_001936_060 Hb_001936_060 Hb_001289_080--Hb_001936_060 Hb_001289_080--Hb_003025_110 Hb_000029_130 Hb_000029_130 Hb_001289_080--Hb_000029_130 Hb_007380_060 Hb_007380_060 Hb_012733_030--Hb_007380_060 Hb_012733_030--Hb_002600_150 Hb_007426_110 Hb_007426_110 Hb_012733_030--Hb_007426_110 Hb_012733_030--Hb_001442_040 Hb_000008_290 Hb_000008_290 Hb_012733_030--Hb_000008_290 Hb_000053_040 Hb_000053_040 Hb_012733_030--Hb_000053_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.4268 21.5342 29.2159 21.2112 48.5352 42.4797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.4048 30.9649 32.6425 69.2356 44.6961

CAGE analysis