Hb_000487_180

Information

Type -
Description -
Location Contig487: 186529-190952
Sequence    

Annotation

kegg
ID pop:POPTR_0007s08380g
description POPTRDRAFT_562882; Per1-like family protein
nr
ID XP_012087400.1
description PREDICTED: post-GPI attachment to proteins factor 3 isoform X1 [Jatropha curcas]
swissprot
ID Q0VFE3
description Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis GN=pgap3 PE=2 SV=1
trembl
ID A0A067JZZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22644 PE=4 SV=1
Gene Ontology
ID GO:0005622
description per1-like family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45003: 186356-190884 , PASA_asmbl_45004: 186488-186713
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_180 0.0 - - PREDICTED: post-GPI attachment to proteins factor 3 isoform X1 [Jatropha curcas]
2 Hb_003436_020 0.0691982488 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
3 Hb_000317_510 0.0844173592 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
4 Hb_001005_030 0.0908411694 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
5 Hb_001089_070 0.0922838098 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
6 Hb_002054_050 0.0962068052 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
7 Hb_000610_040 0.0993256246 - - PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
8 Hb_002092_080 0.0999630201 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Jatropha curcas]
9 Hb_001269_230 0.1008282002 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
10 Hb_000373_080 0.1009837969 - - PREDICTED: serine decarboxylase [Jatropha curcas]
11 Hb_103747_020 0.10139751 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
12 Hb_000589_190 0.1017422704 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
13 Hb_008921_010 0.1028013117 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
14 Hb_010407_050 0.1029059795 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
15 Hb_003645_060 0.1035624393 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
16 Hb_000362_170 0.1041606113 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
17 Hb_002311_310 0.1046020873 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
18 Hb_013726_080 0.1065576582 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
19 Hb_002326_110 0.1071619059 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
20 Hb_027472_120 0.1075620984 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000487_180 Hb_000487_180 Hb_003436_020 Hb_003436_020 Hb_000487_180--Hb_003436_020 Hb_000317_510 Hb_000317_510 Hb_000487_180--Hb_000317_510 Hb_001005_030 Hb_001005_030 Hb_000487_180--Hb_001005_030 Hb_001089_070 Hb_001089_070 Hb_000487_180--Hb_001089_070 Hb_002054_050 Hb_002054_050 Hb_000487_180--Hb_002054_050 Hb_000610_040 Hb_000610_040 Hb_000487_180--Hb_000610_040 Hb_003436_020--Hb_000610_040 Hb_003645_060 Hb_003645_060 Hb_003436_020--Hb_003645_060 Hb_004267_040 Hb_004267_040 Hb_003436_020--Hb_004267_040 Hb_000563_130 Hb_000563_130 Hb_003436_020--Hb_000563_130 Hb_002301_300 Hb_002301_300 Hb_003436_020--Hb_002301_300 Hb_103747_020 Hb_103747_020 Hb_000317_510--Hb_103747_020 Hb_000373_080 Hb_000373_080 Hb_000317_510--Hb_000373_080 Hb_002326_110 Hb_002326_110 Hb_000317_510--Hb_002326_110 Hb_000362_170 Hb_000362_170 Hb_000317_510--Hb_000362_170 Hb_000317_510--Hb_001005_030 Hb_000317_510--Hb_002054_050 Hb_001005_030--Hb_000362_170 Hb_001005_030--Hb_000373_080 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020 Hb_016777_040 Hb_016777_040 Hb_001089_070--Hb_016777_040 Hb_005289_040 Hb_005289_040 Hb_001089_070--Hb_005289_040 Hb_000603_030 Hb_000603_030 Hb_001089_070--Hb_000603_030 Hb_001089_070--Hb_001005_030 Hb_021943_080 Hb_021943_080 Hb_001089_070--Hb_021943_080 Hb_005588_090 Hb_005588_090 Hb_001089_070--Hb_005588_090 Hb_008921_010 Hb_008921_010 Hb_002054_050--Hb_008921_010 Hb_000959_230 Hb_000959_230 Hb_002054_050--Hb_000959_230 Hb_005463_130 Hb_005463_130 Hb_002054_050--Hb_005463_130 Hb_002054_050--Hb_001005_030 Hb_001501_080 Hb_001501_080 Hb_002054_050--Hb_001501_080 Hb_000321_140 Hb_000321_140 Hb_000610_040--Hb_000321_140 Hb_000610_040--Hb_103747_020 Hb_000610_040--Hb_003186_020 Hb_007894_160 Hb_007894_160 Hb_000610_040--Hb_007894_160 Hb_000702_090 Hb_000702_090 Hb_000610_040--Hb_000702_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2769 10.5782 28.7741 17.573 26.9574 17.9284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.50061 6.22878 13.2232 18.5203 15.2185

CAGE analysis