Hb_008103_020

Information

Type -
Description -
Location Contig8103: 14013-18616
Sequence    

Annotation

kegg
ID pop:POPTR_0003s20310g
description POPTRDRAFT_647251; hypothetical protein
nr
ID XP_002303898.2
description hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
swissprot
ID Q0D3J9
description Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica GN=Os07g0682400 PE=2 SV=1
trembl
ID B9GWA9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s20310g PE=4 SV=2
Gene Ontology
ID GO:0000166
description zinc finger ccch domain-containing protein 53-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59209: 13748-18336 , PASA_asmbl_59210: 13784-18171 , PASA_asmbl_59211: 13748-18336 , PASA_asmbl_59212: 14180-18336 , PASA_asmbl_59213: 14180-18336 , PASA_asmbl_59215: 13787-14691 , PASA_asmbl_59216: 18360-18663
cDNA
(Sanger)
(ID:Location)		 039_M09.ab1: 13787-14691

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008103_020 0.0 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
2 Hb_007508_080 0.0659782795 - - PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]
3 Hb_000027_050 0.0770811416 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
4 Hb_003943_010 0.0776939718 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007426_130 0.0783081127 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
6 Hb_001147_110 0.0785231417 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
7 Hb_008253_030 0.0801451422 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
8 Hb_000046_070 0.08123466 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
9 Hb_000780_170 0.0813157904 - - PREDICTED: OBERON-like protein [Jatropha curcas]
10 Hb_000139_130 0.0828791152 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
11 Hb_061878_010 0.0832312253 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
12 Hb_012092_060 0.0836069809 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
13 Hb_007083_030 0.0856428362 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
14 Hb_000786_040 0.0858966924 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
15 Hb_011242_060 0.0862764329 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
16 Hb_000487_380 0.0876402657 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
17 Hb_001946_340 0.0889320642 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
18 Hb_001377_160 0.0898892187 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
19 Hb_004668_060 0.0900605394 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
20 Hb_000069_480 0.0905469078 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008103_020 Hb_008103_020 Hb_007508_080 Hb_007508_080 Hb_008103_020--Hb_007508_080 Hb_000027_050 Hb_000027_050 Hb_008103_020--Hb_000027_050 Hb_003943_010 Hb_003943_010 Hb_008103_020--Hb_003943_010 Hb_007426_130 Hb_007426_130 Hb_008103_020--Hb_007426_130 Hb_001147_110 Hb_001147_110 Hb_008103_020--Hb_001147_110 Hb_008253_030 Hb_008253_030 Hb_008103_020--Hb_008253_030 Hb_004668_060 Hb_004668_060 Hb_007508_080--Hb_004668_060 Hb_000139_130 Hb_000139_130 Hb_007508_080--Hb_000139_130 Hb_001377_160 Hb_001377_160 Hb_007508_080--Hb_001377_160 Hb_004109_230 Hb_004109_230 Hb_007508_080--Hb_004109_230 Hb_005503_040 Hb_005503_040 Hb_007508_080--Hb_005503_040 Hb_000879_040 Hb_000879_040 Hb_000027_050--Hb_000879_040 Hb_001723_140 Hb_001723_140 Hb_000027_050--Hb_001723_140 Hb_000027_050--Hb_003943_010 Hb_001935_160 Hb_001935_160 Hb_000027_050--Hb_001935_160 Hb_000252_050 Hb_000252_050 Hb_000027_050--Hb_000252_050 Hb_001268_280 Hb_001268_280 Hb_000027_050--Hb_001268_280 Hb_003943_010--Hb_001377_160 Hb_001946_340 Hb_001946_340 Hb_003943_010--Hb_001946_340 Hb_000227_220 Hb_000227_220 Hb_003943_010--Hb_000227_220 Hb_000398_080 Hb_000398_080 Hb_003943_010--Hb_000398_080 Hb_003943_010--Hb_000879_040 Hb_159558_010 Hb_159558_010 Hb_003943_010--Hb_159558_010 Hb_000922_370 Hb_000922_370 Hb_007426_130--Hb_000922_370 Hb_002329_040 Hb_002329_040 Hb_007426_130--Hb_002329_040 Hb_009615_170 Hb_009615_170 Hb_007426_130--Hb_009615_170 Hb_000183_020 Hb_000183_020 Hb_007426_130--Hb_000183_020 Hb_001821_090 Hb_001821_090 Hb_007426_130--Hb_001821_090 Hb_000261_030 Hb_000261_030 Hb_007426_130--Hb_000261_030 Hb_000162_030 Hb_000162_030 Hb_001147_110--Hb_000162_030 Hb_001147_110--Hb_008253_030 Hb_002276_240 Hb_002276_240 Hb_001147_110--Hb_002276_240 Hb_001767_140 Hb_001767_140 Hb_001147_110--Hb_001767_140 Hb_184798_080 Hb_184798_080 Hb_001147_110--Hb_184798_080 Hb_002325_040 Hb_002325_040 Hb_001147_110--Hb_002325_040 Hb_008253_030--Hb_001767_140 Hb_002253_080 Hb_002253_080 Hb_008253_030--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_008253_030--Hb_002267_140 Hb_000479_220 Hb_000479_220 Hb_008253_030--Hb_000479_220 Hb_008253_030--Hb_002276_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.3046 47.636 20.6144 32.5027 21.3456 38.2643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.1049 9.99737 16.6471 27.5926 27.8513

CAGE analysis