Hb_000107_270

Information

Type -
Description -
Location Contig107: 180628-185444
Sequence    

Annotation

kegg
ID tcc:TCM_007621
description Histone deacetylase 1 isoform 1
nr
ID XP_007043130.1
description Histone deacetylase 1 isoform 1 [Theobroma cacao]
swissprot
ID O22446
description Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2
trembl
ID A0A061E3N0
description Histone deacetylase OS=Theobroma cacao GN=TCM_007621 PE=3 SV=1
Gene Ontology
ID GO:0004407
description histone deacetylase 19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02168: 180741-185590 , PASA_asmbl_02169: 180741-185590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_270 0.0 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
2 Hb_006059_030 0.0827216487 - - glutamate dehydrogenase, putative [Ricinus communis]
3 Hb_012393_030 0.1040211585 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
4 Hb_000174_260 0.1149311579 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
5 Hb_000364_050 0.1161621583 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
6 Hb_012733_040 0.1174119772 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
7 Hb_005276_040 0.1184922816 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
8 Hb_006573_150 0.1190448535 - - PREDICTED: DNA-directed primase/polymerase protein [Jatropha curcas]
9 Hb_003159_050 0.1205041879 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_004216_060 0.1215641459 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001946_390 0.1250143457 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
12 Hb_001493_150 0.1254137273 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
13 Hb_002392_010 0.1259761412 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
14 Hb_001728_140 0.1273344717 - - -
15 Hb_008147_080 0.1275375641 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
16 Hb_001578_020 0.1291154648 - - Protein virR, putative [Ricinus communis]
17 Hb_001623_190 0.1297963199 - - PREDICTED: uncharacterized protein LOC105638473 [Jatropha curcas]
18 Hb_009615_060 0.1298922418 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
19 Hb_000548_070 0.1299499766 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
20 Hb_004644_030 0.1305639668 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_270 Hb_000107_270 Hb_006059_030 Hb_006059_030 Hb_000107_270--Hb_006059_030 Hb_012393_030 Hb_012393_030 Hb_000107_270--Hb_012393_030 Hb_000174_260 Hb_000174_260 Hb_000107_270--Hb_000174_260 Hb_000364_050 Hb_000364_050 Hb_000107_270--Hb_000364_050 Hb_012733_040 Hb_012733_040 Hb_000107_270--Hb_012733_040 Hb_005276_040 Hb_005276_040 Hb_000107_270--Hb_005276_040 Hb_006059_030--Hb_012393_030 Hb_006059_030--Hb_000364_050 Hb_006059_030--Hb_012733_040 Hb_005976_080 Hb_005976_080 Hb_006059_030--Hb_005976_080 Hb_001195_400 Hb_001195_400 Hb_006059_030--Hb_001195_400 Hb_000841_050 Hb_000841_050 Hb_012393_030--Hb_000841_050 Hb_003159_050 Hb_003159_050 Hb_012393_030--Hb_003159_050 Hb_012393_030--Hb_001195_400 Hb_001493_150 Hb_001493_150 Hb_012393_030--Hb_001493_150 Hb_005601_040 Hb_005601_040 Hb_012393_030--Hb_005601_040 Hb_000174_260--Hb_005276_040 Hb_001221_030 Hb_001221_030 Hb_000174_260--Hb_001221_030 Hb_003605_020 Hb_003605_020 Hb_000174_260--Hb_003605_020 Hb_000330_090 Hb_000330_090 Hb_000174_260--Hb_000330_090 Hb_000684_030 Hb_000684_030 Hb_000174_260--Hb_000684_030 Hb_001269_130 Hb_001269_130 Hb_000174_260--Hb_001269_130 Hb_007904_230 Hb_007904_230 Hb_000364_050--Hb_007904_230 Hb_004452_120 Hb_004452_120 Hb_000364_050--Hb_004452_120 Hb_000364_050--Hb_001269_130 Hb_000364_050--Hb_012733_040 Hb_010863_050 Hb_010863_050 Hb_000364_050--Hb_010863_050 Hb_001242_120 Hb_001242_120 Hb_012733_040--Hb_001242_120 Hb_012733_040--Hb_001195_400 Hb_002301_100 Hb_002301_100 Hb_012733_040--Hb_002301_100 Hb_012733_040--Hb_004452_120 Hb_012733_040--Hb_003159_050 Hb_002045_060 Hb_002045_060 Hb_005276_040--Hb_002045_060 Hb_015057_020 Hb_015057_020 Hb_005276_040--Hb_015057_020 Hb_002392_010 Hb_002392_010 Hb_005276_040--Hb_002392_010 Hb_000428_060 Hb_000428_060 Hb_005276_040--Hb_000428_060 Hb_005276_040--Hb_001221_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.5796 1.95552 11.0614 10.1032 2.41224 3.7305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.98539 8.45029 8.35237 16.074 15.7695

CAGE analysis