Hb_032969_020

Information

Type -
Description -
Location Contig32969: 19331-26377
Sequence    

Annotation

kegg
ID rcu:RCOM_0851870
description hypothetical protein
nr
ID XP_002517379.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LRS2
description Protein ALTERED XYLOGLUCAN 4-like OS=Arabidopsis thaliana GN=AXY4L PE=2 SV=1
trembl
ID B9RUD4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0851870 PE=4 SV=1
Gene Ontology
ID GO:0005794
description protein altered xyloglucan 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34638: 19750-26454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032969_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007409_040 0.0998308521 - - actin family protein [Populus trichocarpa]
3 Hb_146051_010 0.1009419898 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_005396_150 0.1015530154 - - protein binding protein, putative [Ricinus communis]
5 Hb_001500_100 0.1051329674 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007336_010 0.1053280156 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
7 Hb_000140_290 0.10538306 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
8 Hb_001014_210 0.1065628008 - - CYP51 [Hevea brasiliensis]
9 Hb_002728_080 0.1073496127 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_004449_130 0.1090558536 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
11 Hb_001157_200 0.1100573445 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
12 Hb_005634_010 0.1107298569 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_002828_020 0.112242347 - - protein binding protein, putative [Ricinus communis]
14 Hb_007747_080 0.1136943409 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010142_020 0.1138040209 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001492_020 0.1145234461 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
17 Hb_000477_100 0.1149052163 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
18 Hb_010519_050 0.1149503191 - - galactokinase, putative [Ricinus communis]
19 Hb_000429_050 0.114992152 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
20 Hb_000072_120 0.1153477171 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_032969_020 Hb_032969_020 Hb_007409_040 Hb_007409_040 Hb_032969_020--Hb_007409_040 Hb_146051_010 Hb_146051_010 Hb_032969_020--Hb_146051_010 Hb_005396_150 Hb_005396_150 Hb_032969_020--Hb_005396_150 Hb_001500_100 Hb_001500_100 Hb_032969_020--Hb_001500_100 Hb_007336_010 Hb_007336_010 Hb_032969_020--Hb_007336_010 Hb_000140_290 Hb_000140_290 Hb_032969_020--Hb_000140_290 Hb_006006_040 Hb_006006_040 Hb_007409_040--Hb_006006_040 Hb_007409_040--Hb_146051_010 Hb_001454_230 Hb_001454_230 Hb_007409_040--Hb_001454_230 Hb_007409_040--Hb_001500_100 Hb_001051_070 Hb_001051_070 Hb_007409_040--Hb_001051_070 Hb_001114_110 Hb_001114_110 Hb_007409_040--Hb_001114_110 Hb_001157_200 Hb_001157_200 Hb_146051_010--Hb_001157_200 Hb_000172_100 Hb_000172_100 Hb_146051_010--Hb_000172_100 Hb_003544_030 Hb_003544_030 Hb_146051_010--Hb_003544_030 Hb_006452_120 Hb_006452_120 Hb_146051_010--Hb_006452_120 Hb_007747_080 Hb_007747_080 Hb_005396_150--Hb_007747_080 Hb_005634_010 Hb_005634_010 Hb_005396_150--Hb_005634_010 Hb_000049_210 Hb_000049_210 Hb_005396_150--Hb_000049_210 Hb_112198_010 Hb_112198_010 Hb_005396_150--Hb_112198_010 Hb_008725_230 Hb_008725_230 Hb_005396_150--Hb_008725_230 Hb_005396_150--Hb_000140_290 Hb_003020_100 Hb_003020_100 Hb_001500_100--Hb_003020_100 Hb_000322_080 Hb_000322_080 Hb_001500_100--Hb_000322_080 Hb_019280_010 Hb_019280_010 Hb_001500_100--Hb_019280_010 Hb_003544_050 Hb_003544_050 Hb_001500_100--Hb_003544_050 Hb_001434_080 Hb_001434_080 Hb_001500_100--Hb_001434_080 Hb_001500_100--Hb_006452_120 Hb_001492_020 Hb_001492_020 Hb_007336_010--Hb_001492_020 Hb_002235_170 Hb_002235_170 Hb_007336_010--Hb_002235_170 Hb_001205_240 Hb_001205_240 Hb_007336_010--Hb_001205_240 Hb_000363_240 Hb_000363_240 Hb_007336_010--Hb_000363_240 Hb_000327_270 Hb_000327_270 Hb_007336_010--Hb_000327_270 Hb_001511_240 Hb_001511_240 Hb_007336_010--Hb_001511_240 Hb_000140_290--Hb_005634_010 Hb_010142_020 Hb_010142_020 Hb_000140_290--Hb_010142_020 Hb_000556_120 Hb_000556_120 Hb_000140_290--Hb_000556_120 Hb_001500_140 Hb_001500_140 Hb_000140_290--Hb_001500_140 Hb_093458_040 Hb_093458_040 Hb_000140_290--Hb_093458_040 Hb_013726_090 Hb_013726_090 Hb_000140_290--Hb_013726_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4081 14.6455 7.70411 26.0082 10.3588 10.5409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8316 6.56655 15.2721 17.6171 9.99911

CAGE analysis