Hb_001863_350

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1863: 315854-323220
Sequence    

Annotation

kegg
ID rcu:RCOM_1035820
description hypothetical protein
nr
ID XP_012067883.1
description PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
swissprot
ID Q9LME6
description Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana GN=MBD8 PE=2 SV=1
trembl
ID A0A067LA57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15797 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18358: 308117-315124 , PASA_asmbl_18359: 317520-317880 , PASA_asmbl_18361: 321818-321965
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_350 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
2 Hb_002350_010 0.0966554495 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha curcas]
3 Hb_001925_060 0.0978650229 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
4 Hb_001318_070 0.0980867265 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
5 Hb_001001_150 0.1005506122 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012539_060 0.1014889182 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
7 Hb_000958_050 0.1017221489 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
8 Hb_000243_210 0.1021571101 - - protein with unknown function [Ricinus communis]
9 Hb_002581_010 0.1025699089 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
10 Hb_000579_010 0.1034620731 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
11 Hb_002218_090 0.1035991196 - - Poly(rC)-binding protein, putative [Ricinus communis]
12 Hb_000879_040 0.1040300128 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
13 Hb_000025_690 0.104061737 - - spliceosome associated protein, putative [Ricinus communis]
14 Hb_001648_020 0.1043834846 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
15 Hb_002411_110 0.1044023373 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
16 Hb_001226_150 0.1048344719 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
17 Hb_001191_120 0.1051467337 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
18 Hb_000795_040 0.1056541891 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
19 Hb_007747_040 0.1059951233 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
20 Hb_000205_260 0.1060803191 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]

Gene co-expression network

sample Hb_001863_350 Hb_001863_350 Hb_002350_010 Hb_002350_010 Hb_001863_350--Hb_002350_010 Hb_001925_060 Hb_001925_060 Hb_001863_350--Hb_001925_060 Hb_001318_070 Hb_001318_070 Hb_001863_350--Hb_001318_070 Hb_001001_150 Hb_001001_150 Hb_001863_350--Hb_001001_150 Hb_012539_060 Hb_012539_060 Hb_001863_350--Hb_012539_060 Hb_000958_050 Hb_000958_050 Hb_001863_350--Hb_000958_050 Hb_001191_120 Hb_001191_120 Hb_002350_010--Hb_001191_120 Hb_027472_220 Hb_027472_220 Hb_002350_010--Hb_027472_220 Hb_000671_070 Hb_000671_070 Hb_002350_010--Hb_000671_070 Hb_000025_710 Hb_000025_710 Hb_002350_010--Hb_000025_710 Hb_000473_110 Hb_000473_110 Hb_002350_010--Hb_000473_110 Hb_000563_130 Hb_000563_130 Hb_002350_010--Hb_000563_130 Hb_002411_110 Hb_002411_110 Hb_001925_060--Hb_002411_110 Hb_003040_050 Hb_003040_050 Hb_001925_060--Hb_003040_050 Hb_007413_010 Hb_007413_010 Hb_001925_060--Hb_007413_010 Hb_011174_020 Hb_011174_020 Hb_001925_060--Hb_011174_020 Hb_000317_100 Hb_000317_100 Hb_001925_060--Hb_000317_100 Hb_000795_040 Hb_000795_040 Hb_001925_060--Hb_000795_040 Hb_000243_210 Hb_000243_210 Hb_001318_070--Hb_000243_210 Hb_000879_040 Hb_000879_040 Hb_001318_070--Hb_000879_040 Hb_000099_040 Hb_000099_040 Hb_001318_070--Hb_000099_040 Hb_000174_060 Hb_000174_060 Hb_001318_070--Hb_000174_060 Hb_001268_280 Hb_001268_280 Hb_001318_070--Hb_001268_280 Hb_002205_250 Hb_002205_250 Hb_001318_070--Hb_002205_250 Hb_146224_010 Hb_146224_010 Hb_001001_150--Hb_146224_010 Hb_002641_130 Hb_002641_130 Hb_001001_150--Hb_002641_130 Hb_000035_170 Hb_000035_170 Hb_001001_150--Hb_000035_170 Hb_000573_060 Hb_000573_060 Hb_001001_150--Hb_000573_060 Hb_001001_150--Hb_000473_110 Hb_001001_150--Hb_001318_070 Hb_012632_010 Hb_012632_010 Hb_012539_060--Hb_012632_010 Hb_000039_150 Hb_000039_150 Hb_012539_060--Hb_000039_150 Hb_001377_350 Hb_001377_350 Hb_012539_060--Hb_001377_350 Hb_006501_090 Hb_006501_090 Hb_012539_060--Hb_006501_090 Hb_000537_050 Hb_000537_050 Hb_012539_060--Hb_000537_050 Hb_020378_030 Hb_020378_030 Hb_012539_060--Hb_020378_030 Hb_005701_050 Hb_005701_050 Hb_000958_050--Hb_005701_050 Hb_000003_410 Hb_000003_410 Hb_000958_050--Hb_000003_410 Hb_000934_210 Hb_000934_210 Hb_000958_050--Hb_000934_210 Hb_000645_130 Hb_000645_130 Hb_000958_050--Hb_000645_130 Hb_002007_110 Hb_002007_110 Hb_000958_050--Hb_002007_110 Hb_012055_110 Hb_012055_110 Hb_000958_050--Hb_012055_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.250315 0.721391 0.684634 0.284112 0.471862 0.619204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.332895 0.292197 0.444127 0.56711 0.753942

CAGE analysis