Hb_000300_300

Information

Type transcription factor
Description TF Family: SET
Location Contig300: 267666-269134
Sequence    

Annotation

kegg
ID rcu:RCOM_1321690
description set domain protein, putative (EC:2.1.1.43)
nr
ID KDP39657.1
description hypothetical protein JCGZ_02677 [Jatropha curcas]
swissprot
ID Q9SRV2
description Histone-lysine N-methyltransferase SUVR3 OS=Arabidopsis thaliana GN=SUVR3 PE=2 SV=3
trembl
ID A0A067KU34
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_02677 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_300 0.0 transcription factor TF Family: SET hypothetical protein JCGZ_02677 [Jatropha curcas]
2 Hb_008568_010 0.1572402376 - - Phosphoenolpyruvate carboxykinase [ATP], putative [Ricinus communis]
3 Hb_011344_090 0.1720015545 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
4 Hb_011909_070 0.1794525757 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
5 Hb_003780_090 0.1812359394 - - PREDICTED: transcription factor bHLH128 [Jatropha curcas]
6 Hb_000856_140 0.1820686232 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
7 Hb_025194_020 0.1850515026 - - PREDICTED: uncharacterized protein C1F8.04c-like isoform X1 [Jatropha curcas]
8 Hb_001301_170 0.1852889498 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
9 Hb_011173_030 0.1880825091 - - pumilio, putative [Ricinus communis]
10 Hb_002157_050 0.189443625 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
11 Hb_006658_040 0.1914973909 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
12 Hb_011512_060 0.1917053535 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
13 Hb_007101_180 0.1928630546 - - PREDICTED: DNA polymerase beta [Jatropha curcas]
14 Hb_120803_010 0.1932578262 - - PREDICTED: protein kinase and PP2C-like domain-containing protein [Malus domestica]
15 Hb_005048_100 0.1933967766 - - secretory carrier membrane protein, putative [Ricinus communis]
16 Hb_003040_020 0.1946712707 - - PREDICTED: protein cereblon [Jatropha curcas]
17 Hb_003739_030 0.1949183257 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
18 Hb_001452_220 0.1958545065 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
19 Hb_000010_360 0.1961149182 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
20 Hb_002374_320 0.1967744611 - - hypothetical protein JCGZ_12107 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_300 Hb_000300_300 Hb_008568_010 Hb_008568_010 Hb_000300_300--Hb_008568_010 Hb_011344_090 Hb_011344_090 Hb_000300_300--Hb_011344_090 Hb_011909_070 Hb_011909_070 Hb_000300_300--Hb_011909_070 Hb_003780_090 Hb_003780_090 Hb_000300_300--Hb_003780_090 Hb_000856_140 Hb_000856_140 Hb_000300_300--Hb_000856_140 Hb_025194_020 Hb_025194_020 Hb_000300_300--Hb_025194_020 Hb_010661_050 Hb_010661_050 Hb_008568_010--Hb_010661_050 Hb_002157_050 Hb_002157_050 Hb_008568_010--Hb_002157_050 Hb_000505_020 Hb_000505_020 Hb_008568_010--Hb_000505_020 Hb_000109_100 Hb_000109_100 Hb_008568_010--Hb_000109_100 Hb_000120_610 Hb_000120_610 Hb_008568_010--Hb_000120_610 Hb_000821_010 Hb_000821_010 Hb_008568_010--Hb_000821_010 Hb_001427_190 Hb_001427_190 Hb_011344_090--Hb_001427_190 Hb_011930_080 Hb_011930_080 Hb_011344_090--Hb_011930_080 Hb_002888_070 Hb_002888_070 Hb_011344_090--Hb_002888_070 Hb_000333_060 Hb_000333_060 Hb_011344_090--Hb_000333_060 Hb_001935_110 Hb_001935_110 Hb_011344_090--Hb_001935_110 Hb_000086_560 Hb_000086_560 Hb_011344_090--Hb_000086_560 Hb_120803_010 Hb_120803_010 Hb_011909_070--Hb_120803_010 Hb_001047_200 Hb_001047_200 Hb_011909_070--Hb_001047_200 Hb_001645_140 Hb_001645_140 Hb_011909_070--Hb_001645_140 Hb_000236_470 Hb_000236_470 Hb_011909_070--Hb_000236_470 Hb_004032_040 Hb_004032_040 Hb_011909_070--Hb_004032_040 Hb_000577_030 Hb_000577_030 Hb_011909_070--Hb_000577_030 Hb_003780_090--Hb_002157_050 Hb_002890_100 Hb_002890_100 Hb_003780_090--Hb_002890_100 Hb_118840_050 Hb_118840_050 Hb_003780_090--Hb_118840_050 Hb_029695_020 Hb_029695_020 Hb_003780_090--Hb_029695_020 Hb_003780_090--Hb_001047_200 Hb_000010_360 Hb_000010_360 Hb_003780_090--Hb_000010_360 Hb_000032_010 Hb_000032_010 Hb_000856_140--Hb_000032_010 Hb_019153_020 Hb_019153_020 Hb_000856_140--Hb_019153_020 Hb_003040_020 Hb_003040_020 Hb_000856_140--Hb_003040_020 Hb_004429_160 Hb_004429_160 Hb_000856_140--Hb_004429_160 Hb_148909_030 Hb_148909_030 Hb_000856_140--Hb_148909_030 Hb_004627_060 Hb_004627_060 Hb_000856_140--Hb_004627_060 Hb_005048_100 Hb_005048_100 Hb_025194_020--Hb_005048_100 Hb_000365_030 Hb_000365_030 Hb_025194_020--Hb_000365_030 Hb_000237_190 Hb_000237_190 Hb_025194_020--Hb_000237_190 Hb_001301_170 Hb_001301_170 Hb_025194_020--Hb_001301_170 Hb_004787_080 Hb_004787_080 Hb_025194_020--Hb_004787_080 Hb_002259_080 Hb_002259_080 Hb_025194_020--Hb_002259_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.847225 1.18798 0.962976 0.0805738 2.17387 1.01344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.720259 0.11326 0.611777 1.74511 0.565523

CAGE analysis