Hb_000230_130

Information

Type transcription factor
Description TF Family: SBP
Location Contig230: 157772-163915
Sequence    

Annotation

kegg
ID rcu:RCOM_0679130
description Squamosa promoter-binding protein, putative
nr
ID XP_012069441.1
description PREDICTED: squamosa promoter-binding-like protein 7 isoform X1 [Jatropha curcas]
swissprot
ID Q8S9G8
description Squamosa promoter-binding-like protein 7 OS=Arabidopsis thaliana GN=SPL7 PE=1 SV=2
trembl
ID A0A067KYI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02046 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23995: 157757-161902 , PASA_asmbl_23997: 158723-159166 , PASA_asmbl_23998: 160930-161949 , PASA_asmbl_23999: 161346-161464 , PASA_asmbl_24000: 162009-163785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_130 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 isoform X1 [Jatropha curcas]
2 Hb_004531_100 0.0916585957 - - PREDICTED: zinc phosphodiesterase ELAC protein 2 isoform X1 [Jatropha curcas]
3 Hb_000049_020 0.0925882032 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
4 Hb_000588_080 0.0954805263 - - PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
5 Hb_006658_020 0.0963539818 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
6 Hb_001876_040 0.0995687979 - - PREDICTED: mucin-5B [Jatropha curcas]
7 Hb_132840_110 0.1003036665 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
8 Hb_008406_180 0.1004733363 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
9 Hb_010315_020 0.1007503425 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
10 Hb_000086_440 0.1008376428 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
11 Hb_006663_060 0.1012163953 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
12 Hb_001059_130 0.1024580828 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
13 Hb_000679_270 0.1045969222 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
14 Hb_001157_230 0.1046222949 - - Protein AFR, putative [Ricinus communis]
15 Hb_008014_040 0.1061721337 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
16 Hb_022250_010 0.1062729731 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
17 Hb_001016_050 0.1064718125 - - drought-inducible protein [Manihot esculenta]
18 Hb_005977_100 0.1074512064 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
19 Hb_000212_420 0.107752565 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
20 Hb_008511_020 0.1090935284 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_130 Hb_000230_130 Hb_004531_100 Hb_004531_100 Hb_000230_130--Hb_004531_100 Hb_000049_020 Hb_000049_020 Hb_000230_130--Hb_000049_020 Hb_000588_080 Hb_000588_080 Hb_000230_130--Hb_000588_080 Hb_006658_020 Hb_006658_020 Hb_000230_130--Hb_006658_020 Hb_001876_040 Hb_001876_040 Hb_000230_130--Hb_001876_040 Hb_132840_110 Hb_132840_110 Hb_000230_130--Hb_132840_110 Hb_001541_150 Hb_001541_150 Hb_004531_100--Hb_001541_150 Hb_001776_020 Hb_001776_020 Hb_004531_100--Hb_001776_020 Hb_010315_020 Hb_010315_020 Hb_004531_100--Hb_010315_020 Hb_002883_030 Hb_002883_030 Hb_004531_100--Hb_002883_030 Hb_000336_020 Hb_000336_020 Hb_004531_100--Hb_000336_020 Hb_000212_120 Hb_000212_120 Hb_004531_100--Hb_000212_120 Hb_000300_270 Hb_000300_270 Hb_000049_020--Hb_000300_270 Hb_000345_160 Hb_000345_160 Hb_000049_020--Hb_000345_160 Hb_000256_150 Hb_000256_150 Hb_000049_020--Hb_000256_150 Hb_004102_170 Hb_004102_170 Hb_000049_020--Hb_004102_170 Hb_000049_020--Hb_002883_030 Hb_000215_300 Hb_000215_300 Hb_000049_020--Hb_000215_300 Hb_000588_080--Hb_010315_020 Hb_001059_130 Hb_001059_130 Hb_000588_080--Hb_001059_130 Hb_000020_160 Hb_000020_160 Hb_000588_080--Hb_000020_160 Hb_000069_480 Hb_000069_480 Hb_000588_080--Hb_000069_480 Hb_001194_020 Hb_001194_020 Hb_000588_080--Hb_001194_020 Hb_044486_020 Hb_044486_020 Hb_000588_080--Hb_044486_020 Hb_001016_050 Hb_001016_050 Hb_006658_020--Hb_001016_050 Hb_004452_110 Hb_004452_110 Hb_006658_020--Hb_004452_110 Hb_002046_160 Hb_002046_160 Hb_006658_020--Hb_002046_160 Hb_000258_070 Hb_000258_070 Hb_006658_020--Hb_000258_070 Hb_002495_080 Hb_002495_080 Hb_006658_020--Hb_002495_080 Hb_006658_020--Hb_132840_110 Hb_001157_230 Hb_001157_230 Hb_001876_040--Hb_001157_230 Hb_022250_010 Hb_022250_010 Hb_001876_040--Hb_022250_010 Hb_001876_040--Hb_000212_120 Hb_032202_220 Hb_032202_220 Hb_001876_040--Hb_032202_220 Hb_024184_010 Hb_024184_010 Hb_001876_040--Hb_024184_010 Hb_002027_080 Hb_002027_080 Hb_001876_040--Hb_002027_080 Hb_000214_050 Hb_000214_050 Hb_132840_110--Hb_000214_050 Hb_001789_190 Hb_001789_190 Hb_132840_110--Hb_001789_190 Hb_000340_420 Hb_000340_420 Hb_132840_110--Hb_000340_420 Hb_000086_440 Hb_000086_440 Hb_132840_110--Hb_000086_440 Hb_001014_100 Hb_001014_100 Hb_132840_110--Hb_001014_100 Hb_002811_270 Hb_002811_270 Hb_132840_110--Hb_002811_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.094 17.7359 13.9901 26.5159 12.4397 12.974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1186 5.20293 7.93999 10.7131 24.9816

CAGE analysis