Hb_017434_070

Information

Type -
Description -
Location Contig17434: 69686-72141
Sequence    

Annotation

kegg
ID rcu:RCOM_0111710
description transcription factor, putative
nr
ID XP_002528498.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q93WJ9
description Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1
trembl
ID B9SR79
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0111710 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription repressor kan1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16617: 71785-81770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017434_070 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_001246_120 0.1849640466 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
3 Hb_002233_070 0.192135218 - - unnamed protein product [Vitis vinifera]
4 Hb_000370_070 0.2084747163 - - PREDICTED: subtilisin-like protease-like [Citrus sinensis]
5 Hb_001255_010 0.2090309653 - - PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
6 Hb_001133_010 0.2119780845 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001277_040 0.2121947736 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
8 Hb_008248_020 0.2159539407 transcription factor TF Family: DBB zinc finger protein, putative [Ricinus communis]
9 Hb_000221_090 0.2174864486 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
10 Hb_000065_090 0.2189605422 - - potassium channel tetramerization domain-containing protein, putative [Ricinus communis]
11 Hb_009476_150 0.2209297896 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
12 Hb_004917_040 0.2250689273 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
13 Hb_000856_060 0.2251365836 - - -
14 Hb_000523_030 0.2269085146 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
15 Hb_001357_280 0.2272579138 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
16 Hb_006185_010 0.228428733 - - hypothetical protein L484_013453 [Morus notabilis]
17 Hb_021443_090 0.2289139107 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
18 Hb_000117_060 0.2300140392 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
19 Hb_000661_280 0.2301468734 - - PREDICTED: protein TRAUCO [Jatropha curcas]
20 Hb_005714_100 0.2321354661 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]

Gene co-expression network

sample Hb_017434_070 Hb_017434_070 Hb_001246_120 Hb_001246_120 Hb_017434_070--Hb_001246_120 Hb_002233_070 Hb_002233_070 Hb_017434_070--Hb_002233_070 Hb_000370_070 Hb_000370_070 Hb_017434_070--Hb_000370_070 Hb_001255_010 Hb_001255_010 Hb_017434_070--Hb_001255_010 Hb_001133_010 Hb_001133_010 Hb_017434_070--Hb_001133_010 Hb_001277_040 Hb_001277_040 Hb_017434_070--Hb_001277_040 Hb_004917_040 Hb_004917_040 Hb_001246_120--Hb_004917_040 Hb_021443_090 Hb_021443_090 Hb_001246_120--Hb_021443_090 Hb_000258_370 Hb_000258_370 Hb_001246_120--Hb_000258_370 Hb_138585_100 Hb_138585_100 Hb_001246_120--Hb_138585_100 Hb_006711_070 Hb_006711_070 Hb_001246_120--Hb_006711_070 Hb_004108_240 Hb_004108_240 Hb_001246_120--Hb_004108_240 Hb_003126_020 Hb_003126_020 Hb_002233_070--Hb_003126_020 Hb_011689_100 Hb_011689_100 Hb_002233_070--Hb_011689_100 Hb_000117_060 Hb_000117_060 Hb_002233_070--Hb_000117_060 Hb_056012_010 Hb_056012_010 Hb_002233_070--Hb_056012_010 Hb_001662_170 Hb_001662_170 Hb_002233_070--Hb_001662_170 Hb_009476_150 Hb_009476_150 Hb_002233_070--Hb_009476_150 Hb_000138_060 Hb_000138_060 Hb_000370_070--Hb_000138_060 Hb_116702_010 Hb_116702_010 Hb_000370_070--Hb_116702_010 Hb_000221_090 Hb_000221_090 Hb_000370_070--Hb_000221_090 Hb_000236_160 Hb_000236_160 Hb_000370_070--Hb_000236_160 Hb_028207_060 Hb_028207_060 Hb_000370_070--Hb_028207_060 Hb_007793_050 Hb_007793_050 Hb_000370_070--Hb_007793_050 Hb_002250_050 Hb_002250_050 Hb_001255_010--Hb_002250_050 Hb_017159_010 Hb_017159_010 Hb_001255_010--Hb_017159_010 Hb_000523_030 Hb_000523_030 Hb_001255_010--Hb_000523_030 Hb_028487_130 Hb_028487_130 Hb_001255_010--Hb_028487_130 Hb_178793_010 Hb_178793_010 Hb_001255_010--Hb_178793_010 Hb_000203_270 Hb_000203_270 Hb_001255_010--Hb_000203_270 Hb_000836_600 Hb_000836_600 Hb_001133_010--Hb_000836_600 Hb_006054_030 Hb_006054_030 Hb_001133_010--Hb_006054_030 Hb_000200_170 Hb_000200_170 Hb_001133_010--Hb_000200_170 Hb_143766_030 Hb_143766_030 Hb_001133_010--Hb_143766_030 Hb_002875_070 Hb_002875_070 Hb_001133_010--Hb_002875_070 Hb_000069_780 Hb_000069_780 Hb_001133_010--Hb_000069_780 Hb_003226_110 Hb_003226_110 Hb_001277_040--Hb_003226_110 Hb_001195_350 Hb_001195_350 Hb_001277_040--Hb_001195_350 Hb_000661_280 Hb_000661_280 Hb_001277_040--Hb_000661_280 Hb_000950_040 Hb_000950_040 Hb_001277_040--Hb_000950_040 Hb_005649_090 Hb_005649_090 Hb_001277_040--Hb_005649_090 Hb_000270_110 Hb_000270_110 Hb_001277_040--Hb_000270_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.11009 3.56996 1.18867 3.63156 0.344258 0.248256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.626028 0.492472 0 0.393992 1.14403

CAGE analysis