Hb_003581_270

Information

Type -
Description -
Location Contig3581: 211889-213988
Sequence    

Annotation

kegg
ID cit:102630673
description protein kinase APK1A, chloroplastic-like
nr
ID XP_006483208.1
description PREDICTED: protein kinase APK1A, chloroplastic-like isoform X1 [Citrus sinensis]
swissprot
ID Q3E8W4
description Receptor-like protein kinase ANXUR2 OS=Arabidopsis thaliana GN=ANX2 PE=2 SV=1
trembl
ID A0A067GTA4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013028mg PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase nak

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_270 0.0 - - PREDICTED: protein kinase APK1A, chloroplastic-like isoform X1 [Citrus sinensis]
2 Hb_024105_010 0.2132000235 - - CCHC-type integrase [Theobroma cacao]
3 Hb_000803_250 0.2819565031 - - PREDICTED: uncharacterized protein LOC105648317 isoform X1 [Jatropha curcas]
4 Hb_015934_030 0.2849647125 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_003097_090 0.2933975487 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002086_030 0.2982052358 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_000836_580 0.3001162899 - - conserved hypothetical protein [Ricinus communis]
8 Hb_103865_010 0.3012797094 - - hypothetical protein 21 [Hevea brasiliensis]
9 Hb_007849_050 0.3066035998 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
10 Hb_003089_030 0.3103263078 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
11 Hb_001565_060 0.3106593787 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial [Jatropha curcas]
12 Hb_002534_050 0.3130857616 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
13 Hb_000357_120 0.3133813639 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
14 Hb_099084_010 0.314616291 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_000127_190 0.314617497 - - PREDICTED: protein GIGANTEA [Jatropha curcas]
16 Hb_004920_030 0.316697355 transcription factor TF Family: Orphans PREDICTED: histidine kinase CKI1 [Jatropha curcas]
17 Hb_003001_070 0.3169276336 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
18 Hb_002793_060 0.3171067655 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]
19 Hb_005499_010 0.3177250541 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
20 Hb_000077_390 0.318351103 transcription factor TF Family: ERF hypothetical protein POPTR_0019s13330g [Populus trichocarpa]

Gene co-expression network

sample Hb_003581_270 Hb_003581_270 Hb_024105_010 Hb_024105_010 Hb_003581_270--Hb_024105_010 Hb_000803_250 Hb_000803_250 Hb_003581_270--Hb_000803_250 Hb_015934_030 Hb_015934_030 Hb_003581_270--Hb_015934_030 Hb_003097_090 Hb_003097_090 Hb_003581_270--Hb_003097_090 Hb_002086_030 Hb_002086_030 Hb_003581_270--Hb_002086_030 Hb_000836_580 Hb_000836_580 Hb_003581_270--Hb_000836_580 Hb_027402_100 Hb_027402_100 Hb_024105_010--Hb_027402_100 Hb_136660_010 Hb_136660_010 Hb_024105_010--Hb_136660_010 Hb_024105_010--Hb_003097_090 Hb_008021_010 Hb_008021_010 Hb_024105_010--Hb_008021_010 Hb_002006_060 Hb_002006_060 Hb_024105_010--Hb_002006_060 Hb_078954_010 Hb_078954_010 Hb_000803_250--Hb_078954_010 Hb_025964_040 Hb_025964_040 Hb_000803_250--Hb_025964_040 Hb_003599_020 Hb_003599_020 Hb_000803_250--Hb_003599_020 Hb_001817_130 Hb_001817_130 Hb_000803_250--Hb_001817_130 Hb_032202_050 Hb_032202_050 Hb_000803_250--Hb_032202_050 Hb_065755_020 Hb_065755_020 Hb_000803_250--Hb_065755_020 Hb_000364_040 Hb_000364_040 Hb_015934_030--Hb_000364_040 Hb_000077_390 Hb_000077_390 Hb_015934_030--Hb_000077_390 Hb_003207_100 Hb_003207_100 Hb_015934_030--Hb_003207_100 Hb_003605_240 Hb_003605_240 Hb_015934_030--Hb_003605_240 Hb_003077_050 Hb_003077_050 Hb_015934_030--Hb_003077_050 Hb_007007_070 Hb_007007_070 Hb_015934_030--Hb_007007_070 Hb_008380_010 Hb_008380_010 Hb_003097_090--Hb_008380_010 Hb_000532_030 Hb_000532_030 Hb_003097_090--Hb_000532_030 Hb_009393_060 Hb_009393_060 Hb_003097_090--Hb_009393_060 Hb_181824_010 Hb_181824_010 Hb_003097_090--Hb_181824_010 Hb_001989_060 Hb_001989_060 Hb_003097_090--Hb_001989_060 Hb_011360_090 Hb_011360_090 Hb_003097_090--Hb_011360_090 Hb_000869_030 Hb_000869_030 Hb_002086_030--Hb_000869_030 Hb_009372_010 Hb_009372_010 Hb_002086_030--Hb_009372_010 Hb_128695_030 Hb_128695_030 Hb_002086_030--Hb_128695_030 Hb_001231_080 Hb_001231_080 Hb_002086_030--Hb_001231_080 Hb_002485_040 Hb_002485_040 Hb_002086_030--Hb_002485_040 Hb_153161_010 Hb_153161_010 Hb_002086_030--Hb_153161_010 Hb_000622_210 Hb_000622_210 Hb_000836_580--Hb_000622_210 Hb_033930_010 Hb_033930_010 Hb_000836_580--Hb_033930_010 Hb_005941_020 Hb_005941_020 Hb_000836_580--Hb_005941_020 Hb_001894_160 Hb_001894_160 Hb_000836_580--Hb_001894_160 Hb_161901_020 Hb_161901_020 Hb_000836_580--Hb_161901_020 Hb_002639_130 Hb_002639_130 Hb_000836_580--Hb_002639_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0829594 0.17758 0.0943755 0.0132746 0 0.0183071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0585301 0.012593 0.0651185

CAGE analysis