Hb_003038_160

Information

Type -
Description -
Location Contig3038: 92757-99464
Sequence    

Annotation

kegg
ID rcu:RCOM_0535530
description auxilin, putative
nr
ID XP_002521556.1
description auxilin, putative [Ricinus communis]
swissprot
ID Q9FWS1
description Auxilin-like protein 1 OS=Arabidopsis thaliana GN=AUL1 PE=2 SV=2
trembl
ID B9S6D7
description Auxilin, putative OS=Ricinus communis GN=RCOM_0535530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32043: 94804-95263 , PASA_asmbl_32045: 95899-96209 , PASA_asmbl_32046: 96459-96962 , PASA_asmbl_32047: 96964-99481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_160 0.0 - - auxilin, putative [Ricinus communis]
2 Hb_000062_510 0.1055941446 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
3 Hb_001723_060 0.1126033901 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
4 Hb_013749_050 0.1199655719 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
5 Hb_004111_030 0.1211534777 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
6 Hb_004108_060 0.1247237867 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
7 Hb_030736_040 0.1277332432 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
8 Hb_000739_210 0.1290675086 - - PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Jatropha curcas]
9 Hb_001009_260 0.1303242016 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
10 Hb_005260_030 0.1320982811 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
11 Hb_027402_130 0.1321799071 - - malate dehydrogenase, putative [Ricinus communis]
12 Hb_000896_050 0.1338345046 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
13 Hb_001195_770 0.1348106569 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
14 Hb_106890_010 0.1350206524 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
15 Hb_002675_250 0.135039179 - - aspartate aminotransferase, putative [Ricinus communis]
16 Hb_000114_150 0.1351634796 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
17 Hb_023988_030 0.1356669114 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
18 Hb_068804_090 0.1357920995 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
19 Hb_001195_450 0.1363031044 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
20 Hb_006905_030 0.1369420616 - - -

Gene co-expression network

sample Hb_003038_160 Hb_003038_160 Hb_000062_510 Hb_000062_510 Hb_003038_160--Hb_000062_510 Hb_001723_060 Hb_001723_060 Hb_003038_160--Hb_001723_060 Hb_013749_050 Hb_013749_050 Hb_003038_160--Hb_013749_050 Hb_004111_030 Hb_004111_030 Hb_003038_160--Hb_004111_030 Hb_004108_060 Hb_004108_060 Hb_003038_160--Hb_004108_060 Hb_030736_040 Hb_030736_040 Hb_003038_160--Hb_030736_040 Hb_000896_050 Hb_000896_050 Hb_000062_510--Hb_000896_050 Hb_000359_210 Hb_000359_210 Hb_000062_510--Hb_000359_210 Hb_003106_190 Hb_003106_190 Hb_000062_510--Hb_003106_190 Hb_007741_120 Hb_007741_120 Hb_000062_510--Hb_007741_120 Hb_023988_030 Hb_023988_030 Hb_000062_510--Hb_023988_030 Hb_003159_050 Hb_003159_050 Hb_000062_510--Hb_003159_050 Hb_001195_450 Hb_001195_450 Hb_001723_060--Hb_001195_450 Hb_002762_110 Hb_002762_110 Hb_001723_060--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001723_060--Hb_009778_060 Hb_001138_060 Hb_001138_060 Hb_001723_060--Hb_001138_060 Hb_001214_050 Hb_001214_050 Hb_001723_060--Hb_001214_050 Hb_000482_040 Hb_000482_040 Hb_001723_060--Hb_000482_040 Hb_068804_090 Hb_068804_090 Hb_013749_050--Hb_068804_090 Hb_002973_110 Hb_002973_110 Hb_013749_050--Hb_002973_110 Hb_013749_050--Hb_004111_030 Hb_013749_050--Hb_030736_040 Hb_000243_120 Hb_000243_120 Hb_013749_050--Hb_000243_120 Hb_000617_250 Hb_000617_250 Hb_013749_050--Hb_000617_250 Hb_005571_010 Hb_005571_010 Hb_004111_030--Hb_005571_010 Hb_001890_010 Hb_001890_010 Hb_004111_030--Hb_001890_010 Hb_001105_100 Hb_001105_100 Hb_004111_030--Hb_001105_100 Hb_002150_020 Hb_002150_020 Hb_004111_030--Hb_002150_020 Hb_003355_010 Hb_003355_010 Hb_004111_030--Hb_003355_010 Hb_002660_190 Hb_002660_190 Hb_004108_060--Hb_002660_190 Hb_001472_160 Hb_001472_160 Hb_004108_060--Hb_001472_160 Hb_002282_070 Hb_002282_070 Hb_004108_060--Hb_002282_070 Hb_000529_180 Hb_000529_180 Hb_004108_060--Hb_000529_180 Hb_001377_040 Hb_001377_040 Hb_004108_060--Hb_001377_040 Hb_001427_040 Hb_001427_040 Hb_004108_060--Hb_001427_040 Hb_001117_110 Hb_001117_110 Hb_030736_040--Hb_001117_110 Hb_106890_010 Hb_106890_010 Hb_030736_040--Hb_106890_010 Hb_055690_010 Hb_055690_010 Hb_030736_040--Hb_055690_010 Hb_030736_040--Hb_003355_010 Hb_030736_040--Hb_068804_090 Hb_008705_020 Hb_008705_020 Hb_030736_040--Hb_008705_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.44178 3.87971 5.9594 5.33265 1.74868 2.40491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.18557 1.71891 3.96818 6.26063 14.9042

CAGE analysis