Hb_095694_010

Information

Type -
Description -
Location Contig95694: 1337-4307
Sequence    

Annotation

kegg
ID pop:POPTR_0010s08050g
description POPTRDRAFT_883653; hypothetical protein
nr
ID XP_011030474.1
description PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
swissprot
ID Q8S9L6
description Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana GN=CRK29 PE=2 SV=1
trembl
ID B9HSG3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s08050g PE=3 SV=2
Gene Ontology
ID GO:0004672
description receptor-like protein kinase at4g00960

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63566: 3321-4019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_095694_010 0.0 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
2 Hb_003599_020 0.1372346934 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
3 Hb_002482_030 0.1780667806 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
4 Hb_015807_080 0.1821323682 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
5 Hb_000318_410 0.1856093989 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
6 Hb_000035_060 0.1960762952 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]
7 Hb_172676_010 0.2004218372 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
8 Hb_002639_130 0.202611161 - - hypothetical protein JCGZ_08129 [Jatropha curcas]
9 Hb_001499_070 0.2029888284 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
10 Hb_001369_020 0.2031401428 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
11 Hb_004574_040 0.2051514972 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
12 Hb_006040_070 0.2054296976 - - orf107b gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
13 Hb_187005_010 0.2059254955 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
14 Hb_000753_140 0.2064357212 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
15 Hb_002073_020 0.208107097 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
16 Hb_001141_060 0.2086982041 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
17 Hb_132840_020 0.2091694105 - - PREDICTED: protein LHY [Jatropha curcas]
18 Hb_007218_060 0.2093541339 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
19 Hb_002804_010 0.2146181692 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
20 Hb_002874_170 0.2161491736 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_095694_010 Hb_095694_010 Hb_003599_020 Hb_003599_020 Hb_095694_010--Hb_003599_020 Hb_002482_030 Hb_002482_030 Hb_095694_010--Hb_002482_030 Hb_015807_080 Hb_015807_080 Hb_095694_010--Hb_015807_080 Hb_000318_410 Hb_000318_410 Hb_095694_010--Hb_000318_410 Hb_000035_060 Hb_000035_060 Hb_095694_010--Hb_000035_060 Hb_172676_010 Hb_172676_010 Hb_095694_010--Hb_172676_010 Hb_029576_010 Hb_029576_010 Hb_003599_020--Hb_029576_010 Hb_003599_020--Hb_000318_410 Hb_011381_070 Hb_011381_070 Hb_003599_020--Hb_011381_070 Hb_001158_120 Hb_001158_120 Hb_003599_020--Hb_001158_120 Hb_132840_020 Hb_132840_020 Hb_003599_020--Hb_132840_020 Hb_002804_010 Hb_002804_010 Hb_002482_030--Hb_002804_010 Hb_005183_140 Hb_005183_140 Hb_002482_030--Hb_005183_140 Hb_002249_050 Hb_002249_050 Hb_002482_030--Hb_002249_050 Hb_002387_040 Hb_002387_040 Hb_002482_030--Hb_002387_040 Hb_002154_020 Hb_002154_020 Hb_002482_030--Hb_002154_020 Hb_002400_160 Hb_002400_160 Hb_002482_030--Hb_002400_160 Hb_008120_040 Hb_008120_040 Hb_015807_080--Hb_008120_040 Hb_000086_640 Hb_000086_640 Hb_015807_080--Hb_000086_640 Hb_004117_270 Hb_004117_270 Hb_015807_080--Hb_004117_270 Hb_104920_010 Hb_104920_010 Hb_015807_080--Hb_104920_010 Hb_000753_140 Hb_000753_140 Hb_015807_080--Hb_000753_140 Hb_005941_020 Hb_005941_020 Hb_015807_080--Hb_005941_020 Hb_000318_410--Hb_000753_140 Hb_033930_010 Hb_033930_010 Hb_000318_410--Hb_033930_010 Hb_000318_410--Hb_132840_020 Hb_000622_210 Hb_000622_210 Hb_000318_410--Hb_000622_210 Hb_002639_130 Hb_002639_130 Hb_000318_410--Hb_002639_130 Hb_000318_410--Hb_000086_640 Hb_000556_070 Hb_000556_070 Hb_000035_060--Hb_000556_070 Hb_001141_060 Hb_001141_060 Hb_000035_060--Hb_001141_060 Hb_001499_070 Hb_001499_070 Hb_000035_060--Hb_001499_070 Hb_187005_010 Hb_187005_010 Hb_000035_060--Hb_187005_010 Hb_004976_080 Hb_004976_080 Hb_000035_060--Hb_004976_080 Hb_001386_020 Hb_001386_020 Hb_000035_060--Hb_001386_020 Hb_005539_100 Hb_005539_100 Hb_172676_010--Hb_005539_100 Hb_006052_060 Hb_006052_060 Hb_172676_010--Hb_006052_060 Hb_002073_020 Hb_002073_020 Hb_172676_010--Hb_002073_020 Hb_002874_170 Hb_002874_170 Hb_172676_010--Hb_002874_170 Hb_061908_020 Hb_061908_020 Hb_172676_010--Hb_061908_020 Hb_001951_240 Hb_001951_240 Hb_172676_010--Hb_001951_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.025463 0.376588 0.297323 0.0762303 0 0.0656569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.055074 0.034784 0.10228 0.232574

CAGE analysis