Hb_007635_040

Information

Type -
Description -
Location Contig7635: 61671-73553
Sequence    

Annotation

kegg
ID rcu:RCOM_0867420
description Auxin-induced protein 5NG4, putative
nr
ID XP_012079758.1
description PREDICTED: WAT1-related protein At3g45870 isoform X1 [Jatropha curcas]
swissprot
ID Q8W4R9
description WAT1-related protein At4g19185 OS=Arabidopsis thaliana GN=At4g19185 PE=2 SV=1
trembl
ID A0A067K957
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15380 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at4g19185-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57379: 61802-73614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007635_040 0.0 - - PREDICTED: WAT1-related protein At3g45870 isoform X1 [Jatropha curcas]
2 Hb_000086_440 0.0744437737 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
3 Hb_012055_110 0.0752468944 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
4 Hb_005215_010 0.0767316448 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
5 Hb_000710_040 0.0767608932 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
6 Hb_000317_100 0.0776457249 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
7 Hb_000568_050 0.077693772 - - PREDICTED: endoplasmic reticulum metallopeptidase 1 isoform X2 [Jatropha curcas]
8 Hb_000227_220 0.0793021736 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
9 Hb_012760_100 0.0793312863 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
10 Hb_000001_170 0.079613191 - - amino acid transporter, putative [Ricinus communis]
11 Hb_001789_040 0.0798563235 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
12 Hb_003517_040 0.0800894694 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
13 Hb_002475_040 0.0805074866 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
14 Hb_000238_030 0.0806347477 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000441_090 0.0829047315 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
16 Hb_000879_040 0.0831693829 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
17 Hb_000252_050 0.0835961366 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
18 Hb_006663_060 0.0842216447 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
19 Hb_001442_060 0.084808542 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
20 Hb_002217_250 0.085438567 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007635_040 Hb_007635_040 Hb_000086_440 Hb_000086_440 Hb_007635_040--Hb_000086_440 Hb_012055_110 Hb_012055_110 Hb_007635_040--Hb_012055_110 Hb_005215_010 Hb_005215_010 Hb_007635_040--Hb_005215_010 Hb_000710_040 Hb_000710_040 Hb_007635_040--Hb_000710_040 Hb_000317_100 Hb_000317_100 Hb_007635_040--Hb_000317_100 Hb_000568_050 Hb_000568_050 Hb_007635_040--Hb_000568_050 Hb_001109_060 Hb_001109_060 Hb_000086_440--Hb_001109_060 Hb_005227_010 Hb_005227_010 Hb_000086_440--Hb_005227_010 Hb_162275_040 Hb_162275_040 Hb_000086_440--Hb_162275_040 Hb_000035_170 Hb_000035_170 Hb_000086_440--Hb_000035_170 Hb_132840_110 Hb_132840_110 Hb_000086_440--Hb_132840_110 Hb_006501_090 Hb_006501_090 Hb_000086_440--Hb_006501_090 Hb_002007_110 Hb_002007_110 Hb_012055_110--Hb_002007_110 Hb_000066_150 Hb_000066_150 Hb_012055_110--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_012055_110--Hb_000879_040 Hb_000958_050 Hb_000958_050 Hb_012055_110--Hb_000958_050 Hb_002357_070 Hb_002357_070 Hb_012055_110--Hb_002357_070 Hb_005701_050 Hb_005701_050 Hb_012055_110--Hb_005701_050 Hb_005215_010--Hb_000317_100 Hb_002890_130 Hb_002890_130 Hb_005215_010--Hb_002890_130 Hb_011819_020 Hb_011819_020 Hb_005215_010--Hb_011819_020 Hb_000494_050 Hb_000494_050 Hb_005215_010--Hb_000494_050 Hb_003040_050 Hb_003040_050 Hb_005215_010--Hb_003040_050 Hb_012760_100 Hb_012760_100 Hb_005215_010--Hb_012760_100 Hb_000011_100 Hb_000011_100 Hb_000710_040--Hb_000011_100 Hb_001089_030 Hb_001089_030 Hb_000710_040--Hb_001089_030 Hb_000227_220 Hb_000227_220 Hb_000710_040--Hb_000227_220 Hb_183510_020 Hb_183510_020 Hb_000710_040--Hb_183510_020 Hb_057688_010 Hb_057688_010 Hb_000710_040--Hb_057688_010 Hb_001430_080 Hb_001430_080 Hb_000710_040--Hb_001430_080 Hb_000317_100--Hb_002890_130 Hb_000317_100--Hb_011819_020 Hb_000317_100--Hb_003040_050 Hb_002411_110 Hb_002411_110 Hb_000317_100--Hb_002411_110 Hb_000773_040 Hb_000773_040 Hb_000317_100--Hb_000773_040 Hb_011174_020 Hb_011174_020 Hb_000568_050--Hb_011174_020 Hb_000568_050--Hb_012055_110 Hb_006663_060 Hb_006663_060 Hb_000568_050--Hb_006663_060 Hb_000011_270 Hb_000011_270 Hb_000568_050--Hb_000011_270 Hb_000608_300 Hb_000608_300 Hb_000568_050--Hb_000608_300 Hb_000826_070 Hb_000826_070 Hb_000568_050--Hb_000826_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8337 22.4843 19.2108 24.6495 25.6596 17.2272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1736 10.6383 10.8234 24.3036 29.1301

CAGE analysis